3D Structure for ivig_3525_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.44 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment ivig_3525_CDS_0004 1 AcrIE6 0.67 View Alignment ivig_3525_CDS_0004 M N V L E -K ---I I E E I E S M K N D A Y E T L K E E K R K H G A ----S K T A K E L E S Y I Y G L T -C A -V D (60)
MN I E ++ + L T + + ++
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S R R A E -L I E
ivig_3525_CDS_0004 V V E E Y ----A -D K E -N ---V E (81)
++EE
AcrIE6 I L E E Q Y P G H -A A D L S I K N L C P
ivig_3525_CDS_0004 2 AcrIE1 0.63 View Alignment ivig_3525_CDS_0004 M -N ---V L E K I -I ---E ---------------E -I ----E S ----M -K -N -D -A -Y E -T L (60)
M + + +
AcrIE1 M E K K L S D A Q V A L V A A W -R K Y P D L R E S L E E A A S -I -L S L I V F Q A E T -L -S -D -Q -A N -E L -
ivig_3525_CDS_0004 K E E K R K H G A S K T ----A K E -L E S Y I Y G L T C A V D V V E E -Y -----A -D -K E -N ---V E (117)
R+ G + ++ + V V+
AcrIE1 A N Y I R R Q G -L E E A E G A C R -N I D I M R A K W V E V C G E V N -Q -H G I R V -Y -G D -A I D R D V D
ivig_3525_CDS_0004 3 AcrIIC4 0.60 View Alignment ivig_3525_CDS_0004 M N -V L E K I I -E -------------------E ----I -E -S -M K N -D -A -Y E -T L -K E E K -(60)
M + +
AcrIIC4 M K I T S S N -F A T I A T S E N F A K L S V L P K N H R E -P I K G L F -K -S A -V E -Q -F S -S -A R D -F F K
ivig_3525_CDS_0004 R K H -G A -S K T A K E L E S Y I Y -G L T C A V D V V E E Y A D K E N -V E (100)
K + + + + + A+K
AcrIIC4 N E -N Y S K E L A E K F N K E A V N E -A V E K L Q K A I D L A E K Q G I Q F
ivig_3525_CDS_0004 4 AcrIF25 0.55 View Alignment ivig_3525_CDS_0004 M N -V L ----E ---------K -I -I -E -------------------E ----I E S M K N D ---(60)
M +
AcrIF25 M D N D D K K P D -A L I H L R V P A -E -V -K -G R W V K E S R L E G M K L T D W I T G R V E A K A L S I A E V L E
ivig_3525_CDS_0004 -A Y E T L K E E K R K H -------------------------------------G A -------- (120)
A ++ A
AcrIF25 E A A A M A R S L E -D S P I F Y R N K L C A D G I V T I Q Q Q A A R F S A A T D D A T R L D A A L W A R E G Y Q L L S
ivig_3525_CDS_0004 ------------------S K T A K E L E S Y I Y G L T C A V D V V E E Y A D K E -N --V E (172)
TA G ++ +
AcrIF25 S G L P D S Y S G A V P N E G R T G W V T A S Q M A R L F G G E A L W I E R C Q Q E L G G A G K E D G R
ivig_3525_CDS_0004 5 AcrIIA28 0.53 View Alignment ivig_3525_CDS_0004 M N -----V -L -E K I I --------E E I E S M K N D A Y E T L K E E K R K H G A ----S K T A K E L E S Y (60)
M E ++ E+ + D + E R G +K K S
AcrIIA28 M K T I F T K K Q -T E E L L N D I S I E K Q K E L F N S M H D F R S Q H A K E A R I P G W S D K Y N K L E K K M L S D
ivig_3525_CDS_0004 I Y G L T -C A ---V -D V --V -E E Y A D K E N -V -E (91)
+T + + +
AcrIIA28 F E E V T G I K Y D T L E S -E L -I W D N L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;