3D Structure for ivig_2873_CDS_0017 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.52 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment ivig_2873_CDS_0017 1 AcrVIA2 0.73 View Alignment ivig_2873_CDS_0017 M W I C K K C G G E I -I A I I E S D D S F E F -S L D K Y G N L N E F L T C H T E D I E K I -V K Q K K N I V G M Y C (60)
MW CKKCG + I + E DK G + ++ C
AcrVIA2 M W K C K K C G C D R F Y Q D I -T G G I S E V L E M D K D G E V ----------L D E -I -D D V -E Y G D F S C
ivig_2873_CDS_0017 E D C D I E I E D L E K E A ----------V ---W -E D (92)
CD + A +
AcrVIA2 A K C D N S S S K I Q E I A Y W D E I N G K N K -T Y L S K D K
ivig_2873_CDS_0017 2 AcrIIC5 0.46 View Alignment ivig_2873_CDS_0017 M W --I -C K --K C G G E ---I ----------I A I I E -S D -D S F --E -F S ----L --D -K Y G N (60)
M I + G + ++ + S L +
AcrIIC5 M N N S I K F H V S Y -D G T A R A L F N T K E Q A E K Y C L V E -E I N D E M N G Y K R K S W E E K L R E -E N C A S
ivig_2873_CDS_0017 L N E F L T C -H T E D I -E -K -I V K Q -K K N I V G M Y C E D C -------D I E I E D ----L E ------(120)
+++++ NI E++D
AcrIIC5 V Q D W V E K N ----Y T -S -S -Y S D L -F N I C E I E V S S A G Q L V K I D N T E V D D F V E N C Y G F T L E D
ivig_2873_CDS_0017 --K -------E ---A -V -W E D (141)
+ E
AcrIIC5 D L E E F N K A K Q Y L Q K F Y A E C E N
ivig_2873_CDS_0017 3 AcrIC1 0.45 View Alignment ivig_2873_CDS_0017 M W I -C K --K C ---------------G ----------------------------------(60)
M K
AcrIC1 M N N L K K T A I T H D G V F A Y K N T E T V I G S V G R N D I V M A I D A T H G E F N D K N F I I Y A D T N G N P I Y
ivig_2873_CDS_0017 --------------------------------------------------G E -I ---I -A (120)
+
AcrIC1 L G Y A Y L D D N N D A H I D L A V G A C N E D D D F D E K E I H E M I A E Q M E L A K R Y Q E L G D -T V H G T T R -
ivig_2873_CDS_0017 I -I E -S D D S F E F S L D K Y G -N L N E F L T -C H T E D I E K I V -K Q K K N I V -G M Y C E D C D I --E --(180)
+ D LD K+ E
AcrIC1 L A -F D D D G Y M T V R L D Q --Q ---A Y P -D -Y R P ---E N -D -D K H I M W R A L A L T A T G K E L E V F
ivig_2873_CDS_0017 --I E -----D -L E ----K -E --A -V W -E D (209)
+ + W E
AcrIC1 W L V -E D Y E D -E E V N S W D -F D I A D D -W R E L
ivig_2873_CDS_0017 4 AcrIIA26 0.45 View Alignment ivig_2873_CDS_0017 M W -I -C K K C ------------G --------------------------------------(60)
M +
AcrIIA26 M K K L Y I Q -T N Q F A N G E L Q V E N T S Y E L C D T F K E L Y S V A S N L V D E N T L N F V E D N F I E Q N Y K D
ivig_2873_CDS_0017 ------------G -E -----------------I --------I -A I I E S D D S F E F S L D K Y G (120)
G + + ++ +
AcrIIA26 E Y N G V Y E N D G D T G E -F V G Q V F E N K V T E E Q F K E L L E Q L E I T Y -T E F -D P E E E L A K C I A ---
ivig_2873_CDS_0017 N L N E F L T C H T E D I E K I -V K Q -K -K N -I -V G -M Y C E D C -------D I ------------E I (180)
N N +E K ED +I
AcrIIA26 N K N R K ----S E F Y G N G L -K V I -A -E Y -L -E S I S H E D A L A V V T Y Y Y F Y F G F G Y E D Q L I S D I
ivig_2873_CDS_0017 E D L E K -E A V -----W -E -D (199)
D + E
AcrIIA26 K D D Q E D G V K F E H V E R S E T I
ivig_2873_CDS_0017 5 AcrIB6 0.45 View Alignment ivig_2873_CDS_0017 M -W --I C K K C G ----------G E -------I I A -I I E S D D S F E F S L D K Y G N L N E F L T C H T (60)
M + + E + F +
AcrIB6 M G K T Y W Y N E G T D T L L T E K E Y K E L M E R E A K A L Y E E V Q E E E K D --F E S S E K T S F E -------
ivig_2873_CDS_0017 E D I E K I V -K Q K K -N I V G M Y C E D C D I E I E D -L E K E A V W -E D (100)
E + + + E
AcrIB6 E F L K T C Y E -N --E -S D F V L S D N -------E -G N -K -L E E W
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;