3D Structure for ivig_2008_CDS_0001 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.30 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment ivig_2008_CDS_0001 1 AcrIIA21 0.84 View Alignment ivig_2008_CDS_0001 M N F E F M T -I D T S L P P -C M P F P R A L T G -F ---P -V S S T A K V M Y C R M L D A M L S ---K -G Q E D (60)
M + P++L +S + Y D + G D
AcrIIA21 M D Y -D -N E -------N -Y L I P K I L L Q D D F Y S -S L S A K D I L V Y A V L K D R Q I E A L E -K G W I D
ivig_2008_CDS_0001 E N G I L F V C F P V T A I A A V L S R S P M T V K R S L N E L E T A G L I M R V R Q G ---V -G E P N R I Y V L I P (120)
G + + F + +A S S T + LE + LI R R P + I
AcrIIA21 T D G S I Y L N F K L I E L A K M F S C S R T T M I D V M Q R L E E V N L I E R E R V D V F Y G Y S L P Y K -T Y -I -
ivig_2008_CDS_0001 G K E D A A L A (128)
+
AcrIIA21 ---N --E V
ivig_2008_CDS_0001 2 AcrIA3 0.53 View Alignment ivig_2008_CDS_0001 M -N F -E F M T I -D T S --L P P C M P F P R A L T G -F P V S S T A K V M Y C R M L D A M L S K -G -Q E D E N G (60)
M I + + S K R + DENG
AcrIA3 M S F Y I M --Y I K --V K E M S -E -----Q K Q -I -S L R S K Q K E L L Q R F F E ---I -A -E -V D E N G
ivig_2008_CDS_0001 I L F V -C -F -P V -T A I A A V L S -R ---S P M T V K R S L N E L E T A G L I M R V R Q G V G E P N R I Y V L I (120)
L + + + + R L + +V+ +
AcrIA3 D L -C I P L Y D S -S G D L T L F K Q D S R K Y Q M Y A Y F R I L R L I K K Q I F F I K V K K V K R -D K K F L C M H
ivig_2008_CDS_0001 -P G --K -E D A A L -A (134)
+ L
AcrIA3 S N V I D Q V K S V -L E S
ivig_2008_CDS_0001 3 AcrIE5 0.43 View Alignment ivig_2008_CDS_0001 M N F E F M T I D T S L P P C M P F P R A L T G F P V S S T A K V M Y C R M L D A M L S K G Q E D E N G I L F V C F P V (60)
M+ +
AcrIE5 M S -N -D -----R ---N G I I N Q I I D Y T -------------------------------G --
ivig_2008_CDS_0001 T A I A A V L S R S P M T V K R S L N E L E T A G L I M R V R Q G V G E P N R I Y -V L I P G -K --E D A A L A (117)
+ R EL I + + + + A +
AcrIE5 --------T D R D H A E R I Y E E L R A D D R I Y F D D S V G L D R Q -G L L I R E D V D L M A V A A E I E
ivig_2008_CDS_0001 4 AcrIF16 0.41 View Alignment ivig_2008_CDS_0001 M N F E F -M T I D T S ------------------------------------------------(60)
M+
AcrIF16 M S L S D K K E Q K E A Y L D A L R I A P L D R G V L K R I H A V N D N T L D K W L Y V A D R Y P T F R A C W E L W M F
ivig_2008_CDS_0001 --------------------L P P -C -M P F P R A L T G F P V --S S T A K V M Y C -R -M L D A M L S K (120)
F + + + +
AcrIF16 Q R K R R V L I S R K L H V L I N R S T N R -T -I E A F E K T Y P P E E R V V G K S Y R D L V T E -K -G E R S -A -
ivig_2008_CDS_0001 G Q E -D -E N G I L F V C F P V T A I A A V L -S R S P M T V K R S L N E L E T A G L I M R V R Q G V G E -P N R I Y (180)
NG + + ++L + +G+ +++
AcrIF16 N M Y I -I -N G ---E V V G A K D A S I L L G Y ---S S Y N T L Y A K M K R L G I -Q P ----G D -D I S H L K
ivig_2008_CDS_0001 V L I P G K E D A A L A (192)
G+
AcrIF16 P E K R G R K K E -C S
ivig_2008_CDS_0001 5 AcrVA2 0.41 View Alignment ivig_2008_CDS_0001 M N F --E -F -M T I ---D T S ------------------------------------------(60)
M +
AcrVA2 M H H T I A R -M N A F N K A F A N A K D C Y K K M Q A W H L L N K P K H A F F P M Q N T P A L D N G L A A L Y E L R G
ivig_2008_CDS_0001 ------------------------------------------------------------ (120)
AcrVA2 G K E D A H I L S I L S R L Y L Y G A W R N T L G I Y Q L D E E I I K D C K E L P D D T P T S I F L N L P D W C V Y V D
ivig_2008_CDS_0001 --------------------------------------------L P P C M P F P R A L T G -F - (180)
P
AcrVA2 I S S A Q I A T F D D G V A K H I K G F W A I Y D I V E M N G I N H D V L D F V V D T D T D D N V Y V P Q P F I L S S G
ivig_2008_CDS_0001 -----P -----V -------S S T A K V M Y C R M L D A -M L -S K -G Q E D E N G I L F -V -------C (240)
++ +K L + G+
AcrVA2 Q S V A E V L D Y G A S L F D D D T S N T L I K G L L P Y L L W L C V -A E -P D -I T Y K G L P V S R E E L T R P K H
ivig_2008_CDS_0001 ----------F P V T A I A A V L S -R -S P -M -T V K -R S L -N E L E T ----------A G L -I M R - (300)
P + + V R + +
AcrVA2 S I N K K T G A F V T P S E P F I Y Q I G E -R L -G -S E V -R R Y -Q S I I -D G E Q K R N R P H T K R -P H I -R
ivig_2008_CDS_0001 ------V R Q G -------V -G -E -P -N -R I Y V L I P G K E D A A L A (342)
QG + +
AcrVA2 R G H W H G Y W Q G T G Q A K E F -R V R -W -Q -P -A V F V N S -G R V S --S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;