3D Structure for OM373553_CDS_0038 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.79 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment OM373553_CDS_0038 1 AcrIIA14 0.69 View Alignment OM373553_CDS_0038 M -D S F R K V Y E S I Q Y L I -K N E S I T S Y K I E K E T G V S R A K I G R L R N G K N K I D D L T L D T A K K L Y (60)
+ + + ++S I K TGV I RLR+G + L LD+A +LY
AcrIIA14 L K K ---T I E K L L ----N -S -D L N S N Y I A K K T G V E Q S T I Y R L R T G E R Q L G K L G L D S A E R L Y
OM373553_CDS_0038 N Y Q K G L E V M K K L K N K V V E L E N E N N I T L I D S L G Q Y F T D I E N D N N G R F N -V -E Y V L L -N K -V (120)
NYQK +E ++ + + Y + N
AcrIIA14 N Y Q K E I E N ----------M ---K S V K Y ---I S N M S K Q -------E --K -G -Y R V Y V N -V -
OM373553_CDS_0038 E H D N G K M Y Y E V G -V Y R T E E V S F G E E V T E D N -V -S E ---L -E D -N W -L Q T D Q N -G E N Y I E S (180)
+ E + + + ++ + N I
AcrIIA14 V N E D T D K G F L F P S -V P K E V I -E N D K I -D E -L -F -N F E H -H K -P -Y V Q K A K S R Y D K N G I G Y
OM373553_CDS_0038 I F F E N E Q D A E I Y I T L V L K G N K S F A G I A K D -I -G V I -E (217)
E + +
AcrIIA14 K I V Q L ---D E G F Q K F I E L N K E K -------M -K E N L D Y
OM373553_CDS_0038 2 AcrIIA15 0.60 View Alignment OM373553_CDS_0038 M -D S F R K V Y E S I Q Y L I K N E S I T S Y K I E K E T G V S R A K I G R L R N G K N K I D D L T L D T A K K L Y N (60)
M + + ++S I TGVS A I +LRNGK + LTL +A KL
AcrIIA15 M R K ---T I E R L L ----N -S E L S S N S I A V R T G V S Q A V I S K L R N G K K E L G N L T L N S A E K L F E
OM373553_CDS_0038 Y Q K G L E V --M K K L K -N K -V V E L E N --------E -N -N -I T L I D S L G Q Y F T D I E N D -N N G R (120)
YQK E + + + + + F D
AcrIIA15 Y Q K E M E K V D T W I V Y R G -R ----T -A D M N K S Y I -A -E -G -S T Y E E V Y N N F V D K ---Y -G Y -
OM373553_CDS_0038 F N V -E -Y V L L N K -V E H D N G K M Y Y E V G V Y R T E E V S F G E E -V T E D N V S E L E D N W L Q T D Q N G E (180)
+ E ++ + + G + +++ +
AcrIIA15 D V L D E D I Y E I Q -L L K K N -G E N L D D Y D ------------V -D S --------D G I N N Y D K L D
OM373553_CDS_0038 N Y I E S I F -F E N --E Q D A E I Y I T L V L K G -N K S F A G I A K D I G V I -E (224)
ES + + + + ++ + E
AcrIIA15 E F R E S D -Y V D L E D -----Y D Y R E L F E N S S S Q V --Y Y H E F E I T H E
OM373553_CDS_0038 3 AcrIB5 0.58 View Alignment OM373553_CDS_0038 M D S F R K V Y E S -I -Q Y L I -K N E S I T S Y K I E K E T G V S R A K I G R L R N G K N K I D D L T L D ---T -(60)
M + + T Y + TG+ + I + + + +D L++
AcrIB5 M A G --F ----I -K -K Y L D -S R G W T I Y Q L G N A T G L A H Q T I R S A D S K -T -V D Q L S A K N V R L I
OM373553_CDS_0038 A K -K -L -Y -N -Y --------Q K G ---L E V M K K L K N K V V E L E -N ------E -----N --N I (120)
+ + + E
AcrIB5 -A E -V -F -H -F -T A G E I L D E F Y E I E E E I T N D E I L K E L T T V F E K H G H N T D E I S S E L L D G E T
OM373553_CDS_0038 T L ---I D -S -L -G Q -Y -F T D I E N D N N G R F N V -E Y V L L N K -V -E H D N G K M Y Y E V G V Y -R T E (180)
D N +
AcrIB5 I K L D M T D D -N -I T -K -L A D A -V N A T ---E H -F T A -Y ---L -D -S -----------S T ---
OM373553_CDS_0038 E V S F G E E V T E D N V S E L E D N W L Q T D Q N G E N Y I E S I F F E N E Q D A E I Y I T L V L K G N K S F A G -I (240)
AcrIB5 ----------------------------------------------------D --Y -M I -
OM373553_CDS_0038 A K D I G V I -E (249)
+
AcrIB5 ----V E A T Q
OM373553_CDS_0038 4 AcrIIA1 0.58 View Alignment OM373553_CDS_0038 M D S F R K V Y E -S -I -Q -Y L I K N E S I T S Y K I E K E T G V S R A K I G R L R N G K N K I D D L T L D T A K K (60)
M + + +K +T Y + K TG+S + + T+ ++
AcrIIA1 M -T I K ----L -L -D -E -F L K K H D L T R Y Q L S K L T G I S Q N T L K D Q N E --K P L N K Y T V S I L R S
OM373553_CDS_0038 L Y N Y Q K G L E V M -K K L K N K V V E L E N -E N N I T L I D S L G Q Y F T D I E -N -D N N G R F N V -E Y V L L (120)
L + V + + ++E + F + E L
AcrIIA1 L S L I S G L S -V -S -D V L F E L E D I E K N ---S D D L A G F K H L L D K Y K L -S -----F P A Q E F E L Y
OM373553_CDS_0038 N K V E H D N G K M Y Y E V G V Y R T E E V S F G E E V T E D N V S E L -E D -N W L ---Q T D Q N G E N Y I E S I F (180)
+ +
AcrIIA1 C L I K E F E S -A -------------N --------I E V -L -P F -T F N R F ---E ----------
OM373553_CDS_0038 -F -E -N E Q D A E I Y I T L V L K G N K S F A G I A K D I G V I E (215)
+ ++ + +
AcrIIA1 N -E -E H V N I K K D V C K A L E N A I T ---V L K E K K N E L L
OM373553_CDS_0038 5 AcrIIA29 0.57 View Alignment OM373553_CDS_0038 M D S F R K V Y E -S I Q Y L I K N E S I T S Y K I E K E T G V S R A K I G R L R N G K N K I D D L T L D T A K K L Y N (60)
M I L+ IT+YKI K+ S + R +N KI L+ A KL
AcrIIA29 M K P S Q ----K -I K W L L T A T G I T T Y K I G K D I E E S T Q F L D R Y K N D P E K I G G M R L E K A E K L L E
OM373553_CDS_0038 Y Q K G ---L -E V M K -K L K N K V V E L E N E N ---N -I -T L ---------I D S ------------(120)
Y K N + + N + +
AcrIIA29 Y I S N L R Q E D V -I K T N W N N Q Q I L V Q N S T E K E -I -T K Y F N S Y P F A I K L N W I K P H K E M F I V N F
OM373553_CDS_0038 -------------L -G Q -Y -F T D -I E -N D N N G R -F -N ------V ---------------- (180)
+ +
AcrIIA29 D T T S N K T F R K Y P Y D L K -N -L Y -F L -V D K N -R D K M S Q -F A E F L I I C G R K S H F G G S R V L Y E V
OM373553_CDS_0038 ---E Y -V L L N K -V E H D N G K -M Y Y E V G V Y R T E E V S F G E E V T E D N V S E L E D N W L Q -T -D Q N G (240)
Y ++ + + V T + +L
AcrIIA29 E G K K Y Q I I F S -I K R P S E L G P T I R L I N V V E T -----D -T Y R D ----D L V ----P K -I ----
OM373553_CDS_0038 E N Y I E S I F F E N E Q D A E I Y I T L V L K G -N -K -S -F A G I A K D -I G V I -E (286)
+ + + S + + +I
AcrIIA29 S E ---E E S I -----L --R S E D L -D L K G K R V S I K D S E L L E L M S I I D N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;