3D Structure for NC_048772_CDS_0019 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 85.30 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_048772_CDS_0019 1 AcrIIA27 0.72 View Alignment NC_048772_CDS_0019 M K H V F N C S A -F V E S -V S --N -K D -A F I N R E I I A T D I E E A Q Q K F N M I L E N --------Y --(60)
MK FN + + + I + A EA K
AcrIIA27 M K -T F N I I V S E S A N L K E H S S E L -V D N I I Y K V E A K N R R E A F K K A R E E Y S F S S K W K F N M R D L
NC_048772_CDS_0019 -Q -F -V ----S -V -D F -D S I S V -K -I N (87)
AcrIIA27 T -A -I -D N T H -R R A W -G R R Y L -R V E E A
NC_048772_CDS_0019 2 AcrIE2 0.65 View Alignment NC_048772_CDS_0019 M K H V F N C S -A F V E S V S -N -K D -A F I N R E I I A T D -I E E A Q Q K F N M I L E N ------Y -----(60)
M + + I AQQ E
AcrIE2 M N T Y L -I D P R K -N -N D N S G E -R F T V D A V D I T A A A K S A A Q Q I L G E E F E -G L V Y R E T G E S N G
NC_048772_CDS_0019 -Q -F V ---S V -D F ----------D S -I S V -K -I N (94)
AcrIE2 S G M -F Q A Y H H L H -G T N R T E T T V G Y -P F H -V -M E L
NC_048772_CDS_0019 3 AcrIC9 0.59 View Alignment NC_048772_CDS_0019 M K ---H V -F N C S A F V E S -V S N K D A F I -N R E I I A T D I E E A Q Q K F N M I L -E N --Y Q ---F V -(60)
M N + ++ L + +
AcrIC9 M E T K M T S F Y K -I T A ---Y --N --S Q A L Y ---F W G T D A D V D R Y V D W -L N R D R E I N V Y A -A E
NC_048772_CDS_0019 ---S V D F --------------D S ---I S V -K I N (93)
+++
AcrIC9 A I P E A E W A Q Y E G R D D V L S G E E C G W D D F M -S A E A
NC_048772_CDS_0019 4 AcrIE8 0.56 View Alignment NC_048772_CDS_0019 M K H V F N C S A F V E S V S N K D A F -I -N R E I I A T D I E E A Q Q K F N M I L E N Y --Q --F V -S V -D F -(60)
M + + ++ E +
AcrIE8 M T -T I T I N -T Y ---D ----P E -A R F N M S G E E A K E F F A F V E E Q A K V S G F D V Y Y D S C T Y --V
NC_048772_CDS_0019 ----D S I S V ---K I N (75)
+
AcrIE8 D E E S E R F V E K C F Q N Y
NC_048772_CDS_0019 5 AcrIF9 0.56 View Alignment NC_048772_CDS_0019 M K H V F N C S A F V E S V S N K D A F I N R E I I A T D I E E A Q Q K F N M I L E N ----------Y Q F -V -S (60)
MK + V ++++ I AT + A +
AcrIF9 M K A A Y I I K -E V Q N I N S --E R E G T Q I E A T S L S Q A K R I A S K E Q C F H G T V M R I E T V N G L W -L A
NC_048772_CDS_0019 V -D F -D S I S V -K -I -N (76)
D +
AcrIF9 -Y K -E D -G K -R W V D C Q
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;