3D Structure for NC_048771_CDS_0099 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 82.52 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_048771_CDS_0099 1 AcrIIA21 0.78 View Alignment NC_048771_CDS_0099 M K Q K L K Y L V I P T E L A L M K T V K G T G K D -A Q E V E L N F I E K S F Y C Y M H I K Y N Y ---F ---K K Y (60)
M +IP L+ L+ + Y + +
AcrIIA21 M D Y D N E N Y L I P K I L L Q D ---------D -F Y S S L S A K D I L V Y A V L K D R Q I E A L E K G W I D T D
NC_048771_CDS_0099 N -K E F F E S Q D V F V E Y F G V S K K T V Q R M T S N L L K A G L I S I K M T D R N N K Y T V Y D Y V G K T A S V D (120)
+ F S+ T + L + LI D Y++ K
AcrIIA21 G S I Y L N F K L I E L A K M F S C S R T T M I D V M Q R L E E V N L I E R E R V D V F Y G Y S L P ---Y K -T ---
NC_048771_CDS_0099 N N L -T C E D E L D Q D E I P F (137)
AcrIIA21 ---Y -------I N --E V
NC_048771_CDS_0099 2 AcrIA3 0.48 View Alignment NC_048771_CDS_0099 M K Q K L K Y L V I P T E L A L M K T V K G T G K D A Q E V E L N F I E K S F Y C Y M H I K Y N Y F K K Y N K E F F E S (60)
M + E + L K
AcrIA3 M S -F Y I M Y I K V K E M S E ---------Q -K Q I S L R S K Q K E L L Q R F F E I A E V D -E N G D -----
NC_048771_CDS_0099 Q D -V F V E Y F G V S K K T V Q R M T -S N L L --K A G L I S I -K M T D R N N K -Y T V -------------(120)
G +++ K R Y
AcrIA3 --L ---------------C -I P L Y -D S -S G D L T L F K Q D S R K Y Q M Y A Y F R I L R L I K K Q I F F
NC_048771_CDS_0099 Y D Y -V G K T A S V D N N L T C E D E ---L --D -Q -D -E I P F (156)
K L
AcrIA3 I K -V -K K V K R D K K F L C M H S N V I D -Q V -K -S -V L -E S
NC_048771_CDS_0099 3 AcrVA2 0.44 View Alignment NC_048771_CDS_0099 M K Q -K L K Y ------L ----------------V ------------------------I ---(60)
M+ ++ +
AcrVA2 M H H T I A R M N A F N K A F A N A K D C Y K K M Q A W H L L N K P K H A F F P M Q N T P A L D N G L A A L Y E L R G G
NC_048771_CDS_0099 ---------------------------------------------------P -T E -L -A L (120)
+
AcrVA2 K E D A H I L S I L S R L Y L Y G A W R N T L G I Y Q L D E E I I K D C K E L P D D T P T S I F L N L -P D -W -C V -
NC_048771_CDS_0099 M K T V K G -T G K D A Q E V E ---L ----N F I E K S F Y ---------C Y M -H ---I K -Y N Y F K K -Y (180)
+ AQ + Y
AcrVA2 Y V D I --S ---S A Q I A T F D D G V A K H I K G F W A I Y D I V E M N G I N H D V L D F V V D T D T D D N V Y V -
NC_048771_CDS_0099 -N K E F F -E S Q D V F V E Y F ---G -V --S K K -T V Q R M T S N L L K A G L --------I S I -K M T -D (240)
F S +E + + + LL L I+
AcrVA2 P -Q P F I L S S G Q S V A E V L D Y G A S L F D D -D T S -N T L I K G L L P Y L L W L C V A E P D I T Y K G L P V S
NC_048771_CDS_0099 R ----N N K --Y T V ------------------------------Y D Y V -G ---K -T A S --V (300)
R + + K +
AcrVA2 R E E L T R --P K H S -I N K K T G A F V T P S E P F I Y Q I G E R L G S E V R R Y Q S -I I D G E Q K R N R -P H T
NC_048771_CDS_0099 D N N -----------L -T C -E D E L -------------D ---Q D E I P F (346)
+ +
AcrVA2 K R -P H I R R G H W H G Y -W -Q G T G --Q A K E F R V R W Q P A V -F V N S G R V S S
NC_048771_CDS_0099 4 AcrIF17 0.42 View Alignment NC_048771_CDS_0099 M K Q K L K Y L V I P T E L A L M K T V K G T G K D A Q E V E L N F I E K S F Y C Y M H I K Y N Y F K K Y N K E F F E S (60)
M + L
AcrIF17 M F ---S -E I K ----F S ------------S --L ------S D H A L A E L I K ------------
NC_048771_CDS_0099 Q D V F V E Y F G V S K K -T -V Q R M T -S N L L K -A -G L I S I K M T D --R N -N K -Y T V ----------(120)
+ L G+ +IK D
AcrIF17 -------------M -A M E E F -Q Q R L -I K -P G V N T I K T V D V E -P V V -L H A P S D N E M V F I N N
NC_048771_CDS_0099 ---------------------Y ----D -Y -V -G K T A ---S -V -D N N L T C E D E -L D -Q D E I (180)
A +D
AcrIF17 C L K K R R A G E Y I H A S M K D K Y R D L T R K Y P Q -W -F S V K A Y P D -D -L R -G S V S K H -Y V D Y F T K -
NC_048771_CDS_0099 P F (182)
AcrIF17 K E
NC_048771_CDS_0099 5 AcrIF24 0.41 View Alignment NC_048771_CDS_0099 M K Q -K -L K Y ------------------------------------L ----------V ---(60)
M +
AcrIF24 M N A I H I G P F S I T P A A R G L H Y G G L P H H Q W T L Y Y G P R E M A I K T L P D S Y T S S E V R D E F S D I I A
NC_048771_CDS_0099 -------------------I ---------------------------------------- (120)
AcrIF24 E F V I D A R H R Y A P D V L E L V N S D G D A V L A R V A V S R L P E A L S G C I P D D R F P Y W L L T A S R P R L G
NC_048771_CDS_0099 ----------------------P T E L A -L M -K T V K G T G K D -A Q E -V E L N F I E K S F Y C Y M H (180)
T L+ + +
AcrIF24 L P V T L N E Y T A L A V E L S A P P L A W I T G L L P G -E V L -T ---H -D -A -E E W ----R P P T S W E L R
NC_048771_CDS_0099 I K Y N Y F K K Y N K E F F E S Q D V F V E Y F G V S K K T V Q -R M T -S -N L L K A G L I S I -K M T D R -N -N K (240)
S + + G S
AcrIF24 H V V G ----E G S F T G V S G A A A A A L L G M S A ----T N F -R -K -Y T A ----G -D -S A A -N -R --
NC_048771_CDS_0099 Y T V Y D -Y V G K T A S V D N N L T C -E D E L -D Q D E -I P F (274)
+ +
AcrIF24 Q K I S F A A W H Y ---L L D ----R ----L -G -V K R A S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;