3D Structure for NC_048755_CDS_0273 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 82.96 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_048755_CDS_0273 1 AcrIE6 0.70 View Alignment NC_048755_CDS_0273 M N T Y D R T E E L M I Q A R N A L S R L Q D H L K E V V G S H A S I I A E D D Q ---Y D D P E L W W A R P A -L D D (60)
MN E+ Q A + E+ ++ + +
AcrIE6 M N --N D -T E V L E Q Q I K A F E ---L L A D E L K D R L P T L -E I L S P M Y T A V M V T Y D L I G K Q L A S R
NC_048755_CDS_0273 T E R C V D I L N D A F ----N -D -L E N --N -R (88)
++IL + L
AcrIE6 R A E L I E I L E E Q Y P G H A -A -D L S I K N L C P
NC_048755_CDS_0273 2 AcrIE1 0.68 View Alignment NC_048755_CDS_0273 M -N T Y D R T ----E -E ----------L M -I -Q A R N A L S R L Q D H L K E V V G S H A S I I A E -D D Q (60)
M A ++LS + + + + + +A
AcrIE1 M E K K L S D A Q V A L -V A A W R K Y P D L R E S -L -E E A A S I L S L I V F Q A E T L S D Q A -N E L A N Y I R R
NC_048755_CDS_0273 -Y D D P E ----L W W A R P A L D D T E R C V D I L N ----D -A -F -N D L E N -N -R (108)
E + +N D+
AcrIE1 Q -G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I -R -V -Y G D A I D R D V D
NC_048755_CDS_0273 3 AcrIIC4 0.62 View Alignment NC_048755_CDS_0273 M N T -Y D R T --E ---E -------L M I Q A R N A L S R L Q D H L K -E V V G S H A S I I A E D D Q Y D D P E (60)
M E L + R + L + S + +
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E -Q F S S A R D F F K N E N Y S K E L -
NC_048755_CDS_0273 L W W A -R P A L D D T E R C V D I L N D A F N D L E N ---N R (93)
A + + V+ L+ A +E +
AcrIIC4 ---A E K F N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
NC_048755_CDS_0273 4 AcrVA1 0.58 View Alignment NC_048755_CDS_0273 M -N ----------T -Y ---D R T E E -L -M I Q A -----------------------------(60)
M + D + +
AcrVA1 M Y E A K E R Y A K K K M Q E N T K I D T L T D E -Q H D A L A Q L C A F R H K F H S N K D S L F L S E S A F S G E F S
NC_048755_CDS_0273 ---R N -A L S -R -L -Q D -H L ---K -E -------------------V -V G S H A S I I A E -D -- (120)
+ + + I
AcrVA1 F E M Q S D -E N S -K -L R -E V G L P T I E W S F Y D N S H I P D D S F R E W F N F A N Y S E L S E T I Q -E Q G L
NC_048755_CDS_0273 --D -Q -Y D --------D -----P -E L W W A R P A L D D T E R C V D I L N D A F N -D --L ---E -N - (180)
D + D E+ + + +
AcrVA1 E L -D -L D D D E T Y E L V Y -D E L Y T -E A M G E Y E E L N Q D I E K Y L R R I D E E H G T Q Y C -P T G F A -R
NC_048755_CDS_0273 N R (182)
R
AcrVA1 L R
NC_048755_CDS_0273 5 AcrIC3 0.56 View Alignment NC_048755_CDS_0273 M N -T -Y D R T ---E ---E L M I -----------Q A R N -A L S -R L Q D -H L -K --E -V V G ----(60)
M+ + + A + +
AcrIC3 M S I Q V T S T N G R T V N L E I E L G S V V A S S G Q V K F M A D -K -T D R G -L E S -R F -L V P E A G N R R I E
NC_048755_CDS_0273 -S H -A S I I A E D D Q Y D D P E L W W A R P A L D D T E R C V D I L N D A -F N D L E N N R (108)
+ + + + +
AcrIC3 V A L T G R D L E A A N A L F S E L A A S V E A T N E M Y R E L D A E R A Q -I N K -A L E -G
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;