3D Structure for NC_048755_CDS_0266 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.20 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_048755_CDS_0266 1 AcrIE6 0.71 View Alignment NC_048755_CDS_0266 M K -T N E E I L D L V N S A G D A L A E L L V E L Q R Y S N -------K P -W A -K E A A R S V R L S I D Q L E D (60)
M +E + + ++ EL L + +++ L +
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T -Y D L I G K Q L A S R R A E L I E
NC_048755_CDS_0266 A -E T V I ----M -----E -A -E (81)
+ E +
AcrIE6 I L E E -Q Y P G H A A D L S I K N L C P
NC_048755_CDS_0266 2 AcrIE1 0.67 View Alignment NC_048755_CDS_0266 M -K ----T N -E -E I -L ------D --------L ----V ----N -S A G D ----A -L -A E L L V (60)
M K + + + EL+
AcrIE1 M E K K L S D A -Q -V A -L V A A W R K Y P D L R E S L E E -A A S I L S L I V -F -Q A E T L S D -Q -A N E L A N
NC_048755_CDS_0266 E L Q R Y S N K P W A K E A A R ---S V R -L S -I -D Q ----L E D -A E T V I M -----E -A -E (114)
+ R + A A R R + + + +
AcrIE1 Y I R R -Q G L E E A E G A C R N I D I M R A -K W -V E -V C G E V N -Q H G I R V Y G D A I D -R D V D
NC_048755_CDS_0266 3 AcrIIC4 0.63 View Alignment NC_048755_CDS_0266 M K -T N E ---E -I L ---D --------------L V N S A G D A L A E L L V E L Q R Y -S ---N -K P W (60)
MK T+ I + + + ++E + K
AcrIIC4 M K I T S S N F A -T I -A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L
NC_048755_CDS_0266 A K -E -A -A R S V R L S I D Q L E D A E T V I M -E --A E (92)
A V ++ L A ++
AcrIIC4 A E K -F -N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
NC_048755_CDS_0266 4 AcrIF25 0.58 View Alignment NC_048755_CDS_0266 M K -------------T N E E I L -D -------L -V ------------N S A G D A L ----A -E -(60)
M E+ +
AcrIF25 M D N D D K K P D A L I H L R V P A E V K G R W V K E S R L -E -G M K L T D W I T G R V E A K A L S I A E V L -E -E
NC_048755_CDS_0266 L -L -V -E -L -Q -R -Y S ------N ----------------------K -P W -A K E A A R S V R L (120)
+AA +R
AcrIF25 -A -A -A -M -A -R -S L E D S P I F Y R N K L C A D G I V T I Q Q Q A A R F S A A T D D A -T R L D A A L W A R E
NC_048755_CDS_0266 S ---------------------------I D Q ----L -E -D -A -------E -T V I ---M -E (180)
+ Q + +
AcrIF25 -G Y Q L L S S G L P D S Y S G A V P N E G R T G W V T A S Q M A R L -F -G -G E A L W I E R C -Q Q E L G G A -G K
NC_048755_CDS_0266 -A -E (184)
AcrIF25 E D G R
NC_048755_CDS_0266 5 AcrIF2-IC2 0.57 View Alignment NC_048755_CDS_0266 M -K -T N ---E E I L D L V N S A G D A L ---A E L -L V ----E L Q -R ------Y S -N ---------(60)
M T A +A+ A N
AcrIF2-IC2 M A T K T A Q M I A Q Q H K D T V A A C E A A E A I A I -A K D Q V W D G -E G -Y T K Y T F D -D N S V L I Q S G T T
NC_048755_CDS_0266 K -P W -A -K E A A R S V R L S I D Q L E D -A ---E ----T V I ----M -E A E (105)
+ A S++ +D L+D A E + E E
AcrIF2-IC2 Q Y A -M -D A D D A D S I K G Y A D W L D D E A R S A E A S E I E R L L E S V -E E -E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;