3D Structure for NC_041887_CDS_0269 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.12 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_041887_CDS_0269 1 AcrIE1 0.70 View Alignment NC_041887_CDS_0269 M -D ---E L T E A I ---------------K A H ----T E -A L --------I Q F ----D ----Y (60)
M +++ A +
AcrIE1 M E K K L S D A Q V A -L V A A W R K Y P D L R E S L E E -A A S I L S L I -V F Q A E T L S D -Q A N E L A N Y I R R
NC_041887_CDS_0269 K L N R V L D -A L ----E S N S Q A Q N N V A E A V I R A ----E -K N S -R E Y -G (106)
++ + + V V
AcrIE1 Q G L E E A E G -A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D -A I D R D V D
NC_041887_CDS_0269 2 AcrIC3 0.58 View Alignment NC_041887_CDS_0269 M -D E L T E A I ----------K ---A H -------T E A L -----------------------I (60)
M +T A +
AcrIC3 M S I Q V T S T N G R T V N L E I E L G S V V A S S G Q V K F M A D K T D R G L E S R F L V P E A G N R R I E V A L T G
NC_041887_CDS_0269 Q F D Y K L N R V L D A L E S N S Q A Q N N V A E A V I R A E K N S -R E Y -G (100)
+N + L + A+N + + + G
AcrIC3 R D L E A A N A L F S E L A A S V E A T N E M Y R E L D A E R A Q I N K A L E G
NC_041887_CDS_0269 3 AcrIE6 0.56 View Alignment NC_041887_CDS_0269 M D E L T E A I K A H ----T E A L ----I Q F D Y K L ----------N R V L D A L -E S N -S Q A Q N N V A (60)
M TE++ + L D++ + + ++
AcrIE6 M N N D T E V L E Q Q I K A F E L L -A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K -Q L A S R R A E L I
NC_041887_CDS_0269 E A V I R A ----E K N -S --R E Y -G (82)
E++ +
AcrIE6 E I L E E Q Y P G H A A D L -S I K N L C P
NC_041887_CDS_0269 4 AcrIF23 0.52 View Alignment NC_041887_CDS_0269 M D E ---L T E -A I ----------K A H --------T E A L -----------------------(60)
M + +
AcrIF23 M T N F Q T W L -D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
NC_041887_CDS_0269 ----------------------------------------I Q F D -Y K L -N -R V L -D A L -E (120)
++ D
AcrIF23 G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L L T A A K F W -I -E N R -N D S -A Q
NC_041887_CDS_0269 S -N -S Q -A Q N -N V A E -A -V ----I R -----A ------------E K -N -S R E -Y -G (175)
AcrIF23 -E -I -A G -F V M -Q Q K A -L -L A Q H R -S A K A A -G Q A D K V A K I A A E Y N A -L -T A R W G F
NC_041887_CDS_0269 5 AcrIB9 0.51 View Alignment NC_041887_CDS_0269 M D -E L T E ---A I ----K A H ----T E A L ---------------------------------(60)
M + E + KA
AcrIB9 M N K F A F E N D K Y L E R N I K A V V E K I A R D F N L H L K S K Y S K D C E F T V V A D N S F D N I E N S T I F L E
NC_041887_CDS_0269 -----------------------------------------------------------I (120)
AcrIB9 I K R N D G K A C Q D H H I Y A E Y E C D E D D N E Y I A L T V K F Y G S S A S N Q I N T V Q G I K S S K Y A S C I V S
NC_041887_CDS_0269 Q -F -D Y K L N R V L ----D A L E S N -S Q A -Q N N V ----A E A V I R A ------------------(180)
D L++ + E + N A
AcrIB9 -D -T D N Q L S K S I H E L N L K K E K E Q Q E -A W N K K E A E Y A R K K Q A Y V S Q S Q R E K Y E D I F D L P F D
NC_041887_CDS_0269 ----E K N S --R E Y G (194)
AcrIB9 F Y D Y I D K K E Q G L -I
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;