3D Structure for NC_031065_CDS_0108 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.28 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_031065_CDS_0108 1 AcrIE6 0.73 View Alignment NC_031065_CDS_0108 M T K E Q ---K -H -N -I L Q -M V D D -I I D L E K D M S F E I N -S D Y ----G D A E T Y Y Q L S D K L T K A (60)
M+ I + +L TY + L
AcrIE6 M N -N D T E V L E -Q -Q I K -A F E L -L A D E L K D R L P T L E -I L -S P M Y T A V M V T Y D L I G K Q L A S R
NC_031065_CDS_0108 E N A L E Q Y ----L E ----N L V --K E --L (87)
L L K
AcrIE6 R A E L I E I L E E Q Y P G H A A D L -S I K N L C P
NC_031065_CDS_0108 2 AcrIIC4 0.64 View Alignment NC_031065_CDS_0108 M T K E --Q K H N ----------------I L Q ----M V D D I I D L E K D M S F E I N S D Y ----G -D (60)
M + + +++ ++
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E -L A
NC_031065_CDS_0108 A E T Y Y -Q L S D K L T K A E N A L E Q Y L E N L V K E L (90)
+ + + + +E
AcrIIC4 E K F N K E -A V N E A V E K L Q K A I D L A E K Q G I Q F
NC_031065_CDS_0108 3 AcrIE1 0.61 View Alignment NC_031065_CDS_0108 M T ---K E -Q ---K H ----N --------I -L Q -----------M V D D I I D L E K D M S F E I N -(60)
M ++ + D + I
AcrIE1 M E K K L S -D A Q V A L V A A W R -K Y P D L R E S -L E -E A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R
NC_031065_CDS_0108 S D Y G ----D A E T Y Y Q L S D K L T K A E N A L ----E -Q -Y -L E N L V K -E -L (107)
+ + K + + ++ +
AcrIE1 Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G -I -R -V Y G D A I D R D V D
NC_031065_CDS_0108 4 AcrIF23 0.61 View Alignment NC_031065_CDS_0108 M T -K -E -Q ---K H N ------------------------------I --------L Q -----(60)
MT
AcrIF23 M T N F Q -T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R -A V A K T
NC_031065_CDS_0108 ------------------M V D D ---------------I I -D L E K D M -S F E I N S D Y ----- (120)
+ L F I +
AcrIF23 F G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P -S G L L T A -A K F W I E N R N D S A Q E
NC_031065_CDS_0108 --G D A E T Y Y Q L S D K L T --------K A E N A L E Q Y L E N L V K E --L (163)
G + + L + L
AcrIF23 I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
NC_031065_CDS_0108 5 AcrIF2-IC2 0.55 View Alignment NC_031065_CDS_0108 M T K E Q ----K H -N ----I L Q ----------M -V D D I I -D --------L E K -D M -S -F ---(60)
M + + D + D D
AcrIF2-IC2 M A T K T A Q M I A -Q -Q H K D T V A A C E A A E A I A I -A K D Q V -W D G E G Y T K Y T F --D D -N -S V L I Q
NC_031065_CDS_0108 E I N -S D Y ----G D A E T Y Y ----Q L S D K L T K A E -N -A L E Q Y L E N L V -K E L (109)
+ Y DA++ L D + AE +E LE++
AcrIF2-IC2 S G -T T Q Y A M D A D D A D S I K G Y A D W L D D E A R S A E A -S E I E R L L E S V -E E -E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;