3D Structure for NC_031065_CDS_0106 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 90.91 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_031065_CDS_0106 1 AcrIE6 0.71 View Alignment NC_031065_CDS_0106 M Q H L N E K Q L R N L T V E Q L D E L R R E I G -H G I S H L Q E E I R L -Y G -S K ---A D -Y -T -R K -R K -(60)
M Q+ +L + + +
AcrIE6 M -N N D T E V ----L E Q Q I K A F E L L -A D E L K D R L P T L -E I L S P M Y T A V M V T Y -D -L I -G K -Q
NC_031065_CDS_0106 L E K Y L S E V K A V L Q H ----K -R -N -T -G --Q -K (92)
L E+ +L
AcrIE6 L A S R R A E L I E I L E E Q Y P G -H -A A D L S I K N L C P
NC_031065_CDS_0106 2 AcrIF23 0.55 View Alignment NC_031065_CDS_0106 M Q H -L --N -----E -K -Q -L R ---N -------L ---------------------------(60)
M+ Q
AcrIF23 M T N F Q T W L D S A D I P V -Q Q N G -Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T
NC_031065_CDS_0106 --------------------------T V E Q -L -D -E -L R R E I G -H G I S H L -Q E E I R L Y G - (120)
+ + I
AcrIF23 F G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q -D -Q -A -E M A C D P -S G L -L T A A K F W I E -N R N
NC_031065_CDS_0106 -----S K A D Y T R K R K L E -------K -Y L -S E V K A V L Q H K R N -T G -Q --K (169)
+ L + A + N
AcrIF23 D S A Q E I A G F V M Q Q K A L L A Q H R S A K A A G -Q A D K V A K I A A E Y N A L T A R W G F
NC_031065_CDS_0106 3 AcrIIA28 0.55 View Alignment NC_031065_CDS_0106 M Q -H L ---N E K Q -L R N L T V E Q L D E L R R E I G H G I S H L Q E E I R L Y -G -S K ----A D -Y -T R K (60)
M + L +++E EL S E+R+ S +
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E K Q K E L F N S M H D F R S Q H A K E A R I P G -W S D K Y N K L -E -K K M L
NC_031065_CDS_0106 R K L E K Y L S E V K A V L Q H ----K -R N -T G ---Q K (92)
E L + +
AcrIIA28 S D F E E V T G I K Y D T L E S E L I W D N -L S N K F L Y N S
NC_031065_CDS_0106 4 AcrIE1 0.55 View Alignment NC_031065_CDS_0106 M Q H -L --N E K ---Q L R N L -------T V ----E Q L D -E -L R R ----E I G H G I S H L Q E E I R L (60)
M + L + L + + ++ L IR
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L -E E A A S I L -S -L I V -F Q A E T L S D Q A N E L A N Y I R R
NC_031065_CDS_0106 Y G S K ---A D -Y T R K R K L E K Y L S E V K A V L Q H ----K R N -T --G --Q -K (107)
G EV ++
AcrIE1 Q G L E E A E G -A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D -R D -V D
NC_031065_CDS_0106 5 AcrIIC4 0.55 View Alignment NC_031065_CDS_0106 M Q H L N E K Q L R N -----L -------T V E Q -L D E ----L R R E I G H G I S H L Q E E I ---R -L --(60)
M + + E L + + S + +
AcrIIC4 M K I T -S S N F A T I A T S E N F A K L S V L P K N -H -R E P I K G L F K S A V E Q F S S A R D F F K N E -N -Y S
NC_031065_CDS_0106 --Y -G -S K A D Y T R K R K -L -E K Y L -S E V K A V L Q -H K R -N T G Q -K (103)
K + + +G
AcrIIC4 K E -L -A E K F N K E ----A -V N E A -V E K L Q K -A I D L -A E K Q G I Q F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;