3D Structure for NC_019487_CDS_0067 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 90.83 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_019487_CDS_0067 1 AcrIE6 0.76 View Alignment NC_019487_CDS_0067 M N T E Y F L T -A I Q T L E K R E S Q L K W E L S E L Y K R K E Y L D N L E K R Y K D -A V D -P K V I E M S K L Q I (60)
M + + + EL R L+ + + Q+
AcrIE6 M -N N D -T E V -L E ---Q Q I K A F E L L A D E L K D R L P T L E I -L S P M Y -T -A V M -V T Y D L I G K Q L
NC_019487_CDS_0067 E F ----A T K D L E A V S A A Y K ---A F ---Q -S W (91)
+ LE
AcrIE6 A S R R A E L I E I L E E Q Y P G H A A D L S I K N L -C -P
NC_019487_CDS_0067 2 AcrIE1 0.71 View Alignment NC_019487_CDS_0067 M -N -T E Y F L ----T -A I -----------Q T L E K R E S Q L K W E L S E L Y K R K E Y L D N L E K R Y K (60)
M A + S + + + L L N +R
AcrIE1 M E K K L S D A Q V A L V -A A -W R K Y P D L R E S L E E A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R Q G
NC_019487_CDS_0067 D A V ---D P K V I E M S K L Q I E F A T ----K D L E A V -S A A Y K A F -Q S W (104)
+ I+ ++ + V A
AcrIE1 L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R -D -V D
NC_019487_CDS_0067 3 AcrIC3 0.60 View Alignment NC_019487_CDS_0067 M N T E Y F L ---T ---A ---I Q ----T L -E K ----R E S Q L K -W E L S E L Y K R K E Y ----L D N -(60)
M+ + + L E ++
AcrIC3 M S I Q V T S T N G R T V N L E I E L G S V V A -S S -G Q V K F M A D K T -D R G L E S R F L V P E A G N R R I E V A
NC_019487_CDS_0067 L E K R Y K D A V ----D P K V I E M S K L Q -I E -F -A -T K -D L -E A V S A -A -Y K -A F Q S W (114)
L R + + ++ + L A A A
AcrIC3 L T G R D L E -A A N A L F S E L A A S V E -A T -N E -M -Y -R E -L D -A E R A Q -I N -K A L -E G
NC_019487_CDS_0067 4 AcrIIC4 0.60 View Alignment NC_019487_CDS_0067 M -N -T E Y F L T A I ------------Q T L E K R E S -Q L K W E L -S E L -Y K R K E Y L D N L E K R Y K D (60)
M + F+T++ + L + ++ E
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G -L F K S A V E -Q F S S A R D F F K -N E N Y ---
NC_019487_CDS_0067 A V D P -K -V I -E M S K L Q I E F A T K D L E A V S A A Y K A F Q -S W (98)
+ +K + A L + + ++
AcrIIC4 --S K E -L -A E K F N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
NC_019487_CDS_0067 5 AcrIF23 0.57 View Alignment NC_019487_CDS_0067 M -N T E -Y F L T --------------A I ----------------------------------(60)
M N +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F G
NC_019487_CDS_0067 --------------Q T L E -K R ----E ----S Q L K W E L S E L Y K R K E Y L D N L E K R Y K D A -V D (120)
+ + S L D +
AcrIF23 G R A L T G T A R Q K E W A E K I R A -E K V Q Q M N Q D Q A E M A C D P S G L L T A A K F W I E N R ---N D S A Q E
NC_019487_CDS_0067 P -K V I E M S K L Q I -E -F A T ---------K -D L E A V S A A Y K A F Q -S --W (167)
+ +K+ + + A Y A + +
AcrIF23 I A G F V M Q Q K A L -L -A Q H -R S A K A A G Q A -D K V A K I A A E Y N A L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;