3D Structure for NC_018854_CDS_0066 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold with pLDDT = 91.74 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see: Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_018854_CDS_0066 1 AcrIIA7 0.91 View Alignment NC_018854_CDS_0066 M S E -E I K -V H F T N Y I G T K C V N G F P M S K E T Y C K L R G W D V P A D E D P L E E G Y L V E Y P D S K S N H (60)
M+ +
AcrIIA7 M T F G Q A L E S L K R ------------------------------------------------
NC_018854_CDS_0066 P Q F R G Y I S W S P K A A F E A A Y R D V E K G C T F G H A V E L L K S G F R M T R K G W N G K G M Y I T L V S G E N (120)
RKGWNGKGM I E
AcrIIA7 -------------------G ------------------H L V A R K G W N G K G M F I -F M R P E D
NC_018854_CDS_0066 W -A ---M -D K ---------------H -E -N T ---V C -E K R D W L G I K T V D N Q F M P W -V P S Q (180)
+ L K +D + + SQ
AcrIIA7 S L P T N M I V -N Q V K S L P E S F K R W V A N N H -G D S E T D R -I K F T A Y L C M K A A D G T I V N G W L A S Q
NC_018854_CDS_0066 S D V L A E D W V L A Q (192)
+D LA DWV++
AcrIIA7 T D M L A N D W V I V E
NC_018854_CDS_0066 2 AcrIE9 0.86 View Alignment NC_018854_CDS_0066 M S E E I K V H F T N -Y I G T K C V N G F P M S K E T Y C K L R G W D V P A D E D P L E E G Y L V E Y P D S K S N H P (60)
M I +
AcrIE9 M E M Q I N --S R -K -L ----------------------------------------------
NC_018854_CDS_0066 Q F R G Y I S W S P K A A F E A A Y R D V E K G C T F G H A V E L L K S G F R M T R K G W N G K G M Y I T L V S G E N W (120)
T G ++
AcrIE9 -----------------------------------G -R T I T F S R -P G A S Y I F A D L N ----
NC_018854_CDS_0066 A M D K H E N T V C E K R D W L G I K T V -D N -Q F M P W V P S Q ---S D V -L ---A -----E -D -W V L A Q (180)
K LG + + + V
AcrIE9 ------G ----K S G T L G C Q I C S G G G T M G S T L S Y D G D D Q A Q F E A I C -R R W Y R -A -H -V R G E
NC_018854_CDS_0066 3 AcrIIA4 0.85 View Alignment NC_018854_CDS_0066 M S E -E I K V H F T N Y I G T K C V N G F P M S K E T Y C K -L R G W D V P A D E D -P L E E G Y L V E Y P D S K S N (60)
M+ ++ N K T G ++
AcrIIA4 M N I N D L I R E I K N ----K --------D Y T V K -L -S G T --D --S -N S -I T Q L I I R V N N -D --
NC_018854_CDS_0066 H P Q F -R G Y I -S W S P ----K A A -F -E -A -A -Y -R D V E K G C T F G H A V -E L L K S G F R M T R K -G (120)
I E T K
AcrIIA4 --G N E -Y V I S E S E N E S I V E K -F -I -S -A -F -K N G W N Q E --Y E D E -E E F Y N D M Q T I T L K S -
NC_018854_CDS_0066 W N G K G M Y I T L V S G E N W A M D K H E N T V C E K R D W L G I K T V D N Q F M P W V P S Q S D V L A E D W V L A Q (180)
++
AcrIIA4 E ---------------------------------------------------------L N
NC_018854_CDS_0066 4 AcrIF19 0.82 View Alignment NC_018854_CDS_0066 M S E E I K -V H F T N Y I G T K C V N G F P M S K E T Y C K L R G W D V P A D E D P L -E E -G Y L V E Y P -D S K S (60)
M ++ + Y
AcrIF19 M K -P L H T M N Y ---D ------------------------N -----N --Q -M S L V Y E S -Y D E
NC_018854_CDS_0066 N H P Q F R G Y I -S W S P K ---A A F -E -A A Y R ----------D -V -E K G C T F G H A V E L L K S -G F (120)
S + + A ++ + + + S
AcrIF19 Y -G F E Y S V K L K I S V R D Y R G I -D -V S A F N A F P E W E D T L R -M -R D R V M S V E E I E N A M I S R Y K
NC_018854_CDS_0066 R M T R K G W N G K G M Y I T L V S G E N W A M D K H E N T V C E K R D W L G I K T V D N Q F M P W V P S Q S D V L A E (180)
Y
AcrIF19 S L F I A P P -D C -T Y E F -----------------------------------------D ---
NC_018854_CDS_0066 D W V L A Q (186)
AcrIF19 -----I
NC_018854_CDS_0066 5 AcrIIA12 0.82 View Alignment NC_018854_CDS_0066 M S E E I K V H F T N Y I G T K C V N G F P M S K E T -Y -C K L R -G W D V P A D E D -P L E E -G -Y L V E Y P D S (60)
MS N L E +
AcrIIA12 M S K T M --Y -K N ---------------D V -I -E L I K -N A K T ----N -N E -E -L L F T -S V E R
NC_018854_CDS_0066 K S N H P Q F R G Y I S W S P K A A F E A -A Y R D V -E K G C T F G -H A V E L L K S G F R M T R K G W N -G K G M Y (120)
+++ Y P F E+ +
AcrIIA12 -N T R E A A T Q Y F -R C P E K H V S D A G V Y -Y G -E D F E F -D G -F E I F E -D D L I Y T R S Y D K E E ---
NC_018854_CDS_0066 I T L V S G E N W A M D K H E N T V C E K R D W L G I K T V D N Q F M P W V P S Q S D V L A E D W V L A Q (173)
L +
AcrIIA12 --------------------------------------------------L -N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;