3D Structure for NC_018269_CDS_0029 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold with pLDDT = 93.15 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see: Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_018269_CDS_0029 1 AcrIE6 0.85 View Alignment NC_018269_CDS_0029 M S -N K D F L E K ---R L V ----E Y E -A K A E Q A R T D -G -------N Y P E F Q K W E F E A A N I K A L (60)
M+ + LE E ++ ++ +A+ +A
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L -K D R L P T L -E -I -L S P M Y T A V M V T Y D L I G K Q L A S R R A E
NC_018269_CDS_0029 -I K M ---G ----D -E --V ---T E (83)
I + +
AcrIE6 L I E I L E E Q Y P G H A A D L S I K N L C P
NC_018269_CDS_0029 2 AcrIF15 0.85 View Alignment NC_018269_CDS_0029 M S N K D F L E -------K R L V -E Y E -A K A E Q A R -T ----D G ------N --Y P E F Q K W E F E A A (60)
M++ + + G K E E +
AcrIF15 M T T I T I A Y E V S N D K V E T I K T -M V E S Q Q I ---H -N V N F N G E E F T I E R G D F T S I D K D E A E H V
NC_018269_CDS_0029 N I K -A L I K M G -D E -V -T E (78)
+ I
AcrIF15 K L L N K -I Q D I I H -G -Y -S
NC_018269_CDS_0029 3 AcrIF2 0.84 View Alignment NC_018269_CDS_0029 M --S N K D F L E ---------K R L -V ----E Y E -A K A E ------Q A R -T ----D G -------(60)
M +++ +
AcrIF2 M I A Q Q H K D T V A A C E A A E A I A I A K D Q V W D ---G E G Y -T K Y T F D D N -S -V L I Q S -G T T Q Y A M
NC_018269_CDS_0029 ---N ----Y P E F Q -K W E F E A A -N I K -A L I K M G -D E V T -E (99)
+ EA I + V E
AcrIF2 D A D D A D S I K G Y A -D W L D D E A R S A E -A S E I E R L L E S V E E E
NC_018269_CDS_0029 4 AcrIF2-IC2 0.84 View Alignment NC_018269_CDS_0029 M -S -N K D ---F L E K R L ----V ---E Y E -A K -A E -----Q -A R T ----D G -----------(60)
M + + K T D
AcrIF2-IC2 M A T K T A Q M I A Q Q H K D T V A A C E A A E A I A I -A K D -Q V W D G E G -Y T K Y T F D D N S V L I Q S G T T Q
NC_018269_CDS_0029 ------N Y P E F Q K W E F E A A -N I K -----A L I K M G -D E V T -E (101)
+ + I + V E
AcrIF2-IC2 Y A M D A D D A D S I K G Y A D W L D D E A -R S A E A S E I E R L L E S V E E E
NC_018269_CDS_0029 5 AcrIC4 0.83 View Alignment NC_018269_CDS_0029 M S --N K D -F -L E -K R L V E Y E A K A E -Q A R -T -D G N -Y P E F Q -K W E F E A A N -I K -A L I K M -G (60)
M E ++ E E ++ DG + K
AcrIC4 M D N K I T P A -D -E E -K I R E W L N C E E A S V -D -N D G D V W V A V P M T G H W L S D E Q -K A -K Y I E W -
NC_018269_CDS_0029 D E V T E (65)
AcrIC4 R G D E T
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;