3D Structure for NC_016571_CDS_0024 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 84.74 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_016571_CDS_0024 1 AcrIIA7 0.48 View Alignment NC_016571_CDS_0024 M T Q E Q V K G P L L L S Y G -M V N D L M I R S L E N K K A R K F A R K G W N G K H L Y I Q I -H -G S I P T N H I K (60)
MT Q+ L + ARKGWNGK I S+PTN I
AcrIIA7 M T F G Q A L E S L K ----R -----------G ---H L V A R K G W N G K G M F I F M R P E D S L P T N M I V
NC_016571_CDS_0024 F E G T -----D -P -V ---N P L ----D A N F A Y I Q P F F V I V N E -E T K T I N T W V P S V S D A Q A L D (120)
N + + + + +N W+ S +D +
AcrIIA7 N Q V K S L P E S -F -K R W V A N N -H G D S E T D R I K F T A Y L C M K A -A D G T I V N G W L A S Q T D M L -A N
NC_016571_CDS_0024 W Y E V -I (126)
+
AcrIIA7 D W V I V E
NC_016571_CDS_0024 2 AcrIF18 0.48 View Alignment NC_016571_CDS_0024 M T Q E Q V K G P L L L S Y G M -V N D -L -M -I -R -S L E N K K A R K F A R K G W N G K H L -Y I Q I H G S I P T (60)
M + + N G + G
AcrIF18 M -T -T -----------I -K A A -Y -I -S -K D -Q N W ---N ------D G T T T Y W F D V N G E ---
NC_016571_CDS_0024 N H I -K F E G T D P V N P L D A N F A Y I Q -P F -F V I V -N E E T K T I N T W V P S V ---S -D -A -Q -A L D (120)
+ G + + V + +
AcrIF18 T F G V -V H G -------G ---E ---S -W N -A K V V D C D G A P S D Q Y T V -D Q F N -I -T E D -M ---
NC_016571_CDS_0024 W Y E -V -I (127)
AcrIF18 ---I -A E
NC_016571_CDS_0024 3 AcrIIA22 0.46 View Alignment NC_016571_CDS_0024 M T Q E Q V K G P L L L S Y G M V N D L M I R S L E N K K A R K F A R K G W N G K H L Y I Q I H G S I P T N H I -K F E (60)
M E + + + + + I I
AcrIIA22 M V V E E T R D L A E ----T A D C V -V ------------------------I E A -I L ----V ---
NC_016571_CDS_0024 G T D P V N P L -D A N F A Y I Q P F F V -I V N E -E T K T I N T W V P S V S D A Q A L D W Y E -V I (112)
+ V I + + I VP + I
AcrIIA22 ----D ---D ---G L R Y R Q L S V G I -K D E -N G D I I R I V P I S -T V -------L -I
NC_016571_CDS_0024 4 AcrVIA3 0.45 View Alignment NC_016571_CDS_0024 M T Q E -Q V K G P L L L S Y G M V N D L M I R S L E N K K A R K F A --R K G W N G K H -L -Y -I Q I ---H G S I (60)
M + L + + +G + I HG +
AcrVIA3 M F -K E F L E K C L -R ----------Y ----G N L Y I -L E E ----T G D R K -K -V K R I S K R H G K V
NC_016571_CDS_0024 P T N -H I K F E G T D P V N P L D A N F A Y I -Q P F F V I V -N E E T K T I N T W V P S V S D A Q A L D W Y E V I (119)
+ F+ + + Q F+ + + L+
AcrVIA3 T E A S V L L F D S G T K R T T I -N E I Y L N S Q G Y F I -I R D ---------Q K ---R L K -L E --K F K
NC_016571_CDS_0024 5 AcrIF10 0.44 View Alignment NC_016571_CDS_0024 M T Q E Q V K G P L L L S Y G M -V N D L M I R S L E N K -K A R K F A R K G W N G K H L -Y I Q I -H G S I P T N H I (60)
MT + + I N + ++
AcrIF10 M T ----------T -F R I -E N V R I ----E -T ---------I N D F D M V K F D -L V -T -D L G R V
NC_016571_CDS_0024 K F E G T --D P -V N P L ----D A N ---F A Y I -Q P F F V I V N E E T K T I N T W V P -S V S D A Q A ----(120)
+ + + ++
AcrIF10 E L A E H V N Y D S E G D F K S V E Y T D S N I R Y N M V D E L C S V F D L T D -K -P S L M -P A I D Y V T F A E I I
NC_016571_CDS_0024 --L -D -W Y E V I (131)
+ +
AcrIF10 E A V E -E M L -E A
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;