3D Structure for NC_016571_CDS_0024 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold with pLDDT = 84.74 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see: Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_016571_CDS_0024 1 AcrIF19 0.86 View Alignment NC_016571_CDS_0024 M T Q E Q V K G P L L L S Y G M V N D L M I R S -L E N K K A R K F A -R K G W N -G K H L Y I Q I ----H ---G S (60)
M + M G +
AcrIF19 M K --P L -H T M N Y D -N ---N Q M S L V Y E S ------Y D E -----Y G F E Y S V -K L K I S V R D Y R G
NC_016571_CDS_0024 I P T N -H I -------K F ---E -G T -D P V -N P L ----D A N -F A Y I Q P F F V I V N E E T K T I N T -(120)
I + + F I
AcrIF19 I D V S A -F N A F P E W E D T L R M -R --D R V -M -S V E E I E N -A M I S R Y K S L F -I ----------A
NC_016571_CDS_0024 W V P -S V -S D A Q A L D -W -Y E V I (141)
P I
AcrIF19 -P P D --C -------T -Y E F D I
NC_016571_CDS_0024 2 AcrIIC2 0.85 View Alignment NC_016571_CDS_0024 M T Q E Q V -K G P L L L S Y G M V N D -L M I R S L E N K K A R K F A R K G W -N -G K H L Y I Q I -------H G (60)
M+ ++ +G + + +
AcrIIC2 M S K N N I F N K ----Y P T ----I -I H ----------G E A R G -E -N D E F V V H T R Y P R F L A R K -
NC_016571_CDS_0024 S I -P T N H I K F E G -T D P V N P L D A N F A Y I Q -P F F V I V N E E T K T I N -T W V P S -----V ---S D (120)
S G P+ P+ I P ++ ++
AcrIIC2 S -F D -D N F T --G E -M P A K P V N G E L G Q I G E P R R L A Y D S R L G L W L S D F I M L D N N K P K N M E D W
NC_016571_CDS_0024 A Q A --------------L --D W -Y -E --V --I (152)
+ + +
AcrIIC2 L G -Q L K A A C D R I A A D D L M L N E -D A A D L E G W D D
NC_016571_CDS_0024 3 AcrVIB1 0.85 View Alignment NC_016571_CDS_0024 M T Q E Q -V K G -P ---L -L -L ------S Y G M V N D L M I R S L --E -N -K K -A R K F A R K G -W -N G (60)
M + ++ + + S + +
AcrVIB1 M K D -L D --L S -K L K G E -E -I A Q W L L N N K K A T A I Q L S S E R T -D T D D -G -F --M H I L V -H K D
NC_016571_CDS_0024 K H L Y I Q I -----H -G -S I P T N H I K F E G T D P V N P L D A N F A Y I Q P F F V I V N E E T K T I N T W V P (120)
+ I +N + F + + E I T
AcrVIB1 E Y V E I I Y S Y L K I D E D D V -M Q N F T I Y -S K R W -G -N -----I D N S Y F E L Q T F E -G E I F T G E S
NC_016571_CDS_0024 S -V S D A Q -A --L -D W Y -E V I (140)
+ L +
AcrVIB1 D K I -L C G V -L S L G -D L T T L K
NC_016571_CDS_0024 4 AcrIII-1 0.85 View Alignment NC_016571_CDS_0024 M T Q E Q V K G P L L L ----S Y G M V N D L M I ----R S L -E ----N K K A R K F A R K G W N G K H L -Y I -(60)
M+ + + + + I R +
AcrIII-1 M N K V Y L A N A F -S I N M L T K F P -T K V V I D K I D R L -E -F C E N -I D N E D I I N S I G H D S --T I -Q
NC_016571_CDS_0024 Q I -H G S I P T N H I K F E G T D P -V -N P L -D A N F A Y I -Q P F F V I V -N E E T ---K T I N T W V P ---(120)
+ S+ + + V V I T
AcrIII-1 -L I N -S L C G T T F Q K N R V E I K -L ---E -K E ----D -K L Y V -V Q I S Q R L E E G K I L T L E E I L K
NC_016571_CDS_0024 S V S D A -Q -A L D W Y E -V -I (138)
+ + E +
AcrIII-1 L Y E S -G -K -V Q F F E I I V D
NC_016571_CDS_0024 5 AcrVIA5 0.85 View Alignment NC_016571_CDS_0024 M T Q E Q V ---K G P L L L ---S -Y -G -M V N D L M I ---R S -L -E -N K K A R K F A R K G W N G K H L Y I (60)
M + M + I + AR + ++Y+
AcrVIA5 M E -R N F K K V T E N -T G R K E V F -K -V M H D K V E I I N D --F -N T N E --K -R E A R I I F H D Q K I Y V
NC_016571_CDS_0024 Q I H G S ---I ----P -T N H I K F E G T D P V N P L D A N -F -A Y -I Q P F F V I V N E E T K T I N T W V P -(120)
+ + I G+ + FF + I +
AcrVIA5 I L Y Q N L N F E E L K W L N -F Y I L I Y G N ----Q ----S -Y --G K N T F F E F K L N K N N L I Y H -L Q V
NC_016571_CDS_0024 --S V S D A Q A --------L -D W ---Y E V I (148)
+ + +
AcrVIA5 W N I I E N K K F K S K S I S L L V K A -L S S K A G V
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;