3D Structure for NC_009815_CDS_0026 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 81.40 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_009815_CDS_0026 1 AcrIB6 1.00 View Alignment NC_009815_CDS_0026 M G K T Y W Y N E G T D T L L T E K E Y K E L M E R E A K A L Y E E V Q E E E K D F E S S E K T S F E E F L K T C Y E N (60)
MGKTYWYNEGTDTLLTEKEYKELMEREAKALYEEVQEEEKDFESSEKTSFEEFLKTCYEN
AcrIB6 M G K T Y W Y N E G T D T L L T E K E Y K E L M E R E A K A L Y E E V Q E E E K D F E S S E K T S F E E F L K T C Y E N
NC_009815_CDS_0026 E S D F V L S D N E G N K L E E W (77)
ESDFVLSDNEGNKLEEW
AcrIB6 E S D F V L S D N E G N K L E E W
NC_009815_CDS_0026 2 AcrIC5 0.57 View Alignment NC_009815_CDS_0026 M G K T Y W Y N E G T D T L L T E K E -Y K E L -M E -R -E A K A L Y E E V Q E E E K D F E S S -E -K -T S F E E F (60)
M + L EE+ E + EF
AcrIC5 M -S -K V T L N -G Q -Q I D F D A A ----V -N L -M -D A E L R E E L H S A -------Q E W -T -N D Q E F
NC_009815_CDS_0026 L K T C Y E N E S D F V L S D N E G N K L E E W (84)
L E
AcrIC5 L D A Y V Q A H A -A K F D -G E E F -Q -V A
NC_009815_CDS_0026 3 AcrIIC5 0.56 View Alignment NC_009815_CDS_0026 M G -K T -Y W Y N E G --T D T L L -T E K E Y K E L M E -R -E A K A L Y E E V Q -E E -E K D F E S S E K T S F E (60)
M + L T E S
AcrIIC5 M N N S I K F H V S Y D G T A R A L F N T K E Q A E K Y C L V E E I N D E M N G Y K R K -S W E E K L R E E N C A S V Q
NC_009815_CDS_0026 ----E F L K T C Y E -N E --S D F V L S D N ----------------------------------- (120)
+ Y + + +
AcrIIC5 D W V E K N Y T S S Y S D L F N I C E I E V -S S A G Q L V K I D N T E V D D F V E N C Y G F T L E D D L E E F N K A K
NC_009815_CDS_0026 --E G ---N K L E E W (133)
E
AcrIIC5 Q Y L Q K F Y A E C E -N
NC_009815_CDS_0026 4 AcrIE3 0.54 View Alignment NC_009815_CDS_0026 M G K T Y W Y N E G T D T L L T E K E Y K E L M E R E A K A L Y E E -V Q E E E -K D F E S S E K T S F E E F -L K -T (60)
M K + E E +
AcrIE3 M -K -I -T -N D -T ------T T --------Y E V A E -L M ----G -S ----E A D E L D G R I M -M G
NC_009815_CDS_0026 C Y E -N E -S D ----F V L --------S -D N ---E ----G N K L E E W (103)
L D E
AcrIE3 L L -S R -E C -V V D T D D L S E D Q W L A L -I D E S Q K V R R E Q F E S D E -A
NC_009815_CDS_0026 5 AcrVIA2 0.52 View Alignment NC_009815_CDS_0026 M G K T Y W Y N E G T D T L L T E K E Y K E L M E R E A K -A L Y E E V Q E E E K D F E -S S E K T S F E E F L K T C Y (60)
M G D + E EV +E D + S +
AcrVIA2 M -W K -C K K C G C D -R F Y Q D I T G G I S E V L E M D K -D G E V L D E I D D V -E Y G D -F S C A K C D N S S S
NC_009815_CDS_0026 E N E -S D F V ----L S D N E G -N -K L -E E W (87)
+ ++ L +
AcrVIA2 K I -Q E I -A Y W D E I N G K N -K -T Y L S K D K
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;