3D Structure for NC_007808_CDS_0080 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.63 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_007808_CDS_0080 1 AcrIIA27 0.74 View Alignment NC_007808_CDS_0080 M K Q Y Q V K F -V -W -L ------L -Q P D Y N T R V Y A H N K D H A Y K I A L L N A E A D G W R Y E D ---P -(60)
MK+ ++ L +V A+N+ A K A
AcrIIA27 M K T F N I I V S E S A N L K E H S S E -L V D N I I Y K V E A K N R R E A F K K A R E E Y S F S S K W K F N M R D L T
NC_007808_CDS_0080 S --E -----T ---K -I -E --E -L K (84)
+
AcrIIA27 A I D -N T H R R A W G R R Y -L R V E -E -A
NC_007808_CDS_0080 2 AcrIE2 0.72 View Alignment NC_007808_CDS_0080 M K Q Y Q V K F V W L L --Q P D Y N -T R V Y A H -N K D H A Y K I A L L N A E A D G W -R Y E -D P S ---E T -K (60)
M +Y + + + V A A +A + + + +
AcrIE2 M N T Y L I D P R K N N D N S G E R -F -T V D A V D I T A A A K S A A Q Q I L G E E F E G L V Y R E T G E S N G S G M
NC_007808_CDS_0080 I -E E ---------------------L -K (88)
AcrIE2 -F Q -A Y H H L H G T N R T E T T V G Y P F H V M E L
NC_007808_CDS_0080 3 AcrIC9 0.63 View Alignment NC_007808_CDS_0080 M K ----Q Y -Q -V K F V W L L Q P D Y N T R -V Y A H N K D H A Y K I A L L N A E A D G W R Y E D P S E T K I E E (60)
M + + + + + + + + + D +E
AcrIC9 M E T K M T S F Y -K I T -A Y --N -S Q A L -Y -F W G T D A D V D R Y -V D W L N R D R E I N -V ---Y A A E A
NC_007808_CDS_0080 ----------------------------L -K (91)
+
AcrIC9 I P E A E W A Q Y E G R D D V L S G E E C G W D D F M S A E A
NC_007808_CDS_0080 4 AcrIF5 0.58 View Alignment NC_007808_CDS_0080 M -K Q -Y Q -V K -F V W L -L Q -P D Y N T ---------R --V Y A -H -N K D H A Y K I A L L N A E A D G W (60)
M + V + Y + A A A A G
AcrIF5 M S R P T V V T V -T E -T P R -N P G S Y E V N V E R D G K M V V G R A R A G -S D P G A A A A K A M Q M A M E W G S
NC_007808_CDS_0080 -R -Y E D -P S E T K I --E -E -----L K (85)
S +
AcrIF5 P N Y V I L G -S N K V L A F I P -E Q L R V K M
NC_007808_CDS_0080 5 AcrIF9 0.58 View Alignment NC_007808_CDS_0080 M K -Q Y Q V K F V W L L -Q P D Y N T R V Y A H N K D H A Y K I A L L N A E A D G W R Y E D P S E T K I E E -----(60)
MK Y +K V + + T + A + A +IA + +IE
AcrIF9 M K A A Y I I K E V Q N I N S E R E G T Q I E A T S L S Q A K R I A S K E ----Q C F --H G T V M R I E T V N G L W
NC_007808_CDS_0080 ----------L --K (74)
+
AcrIF9 L A Y K E D G K R W V D C Q
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;