3D Structure for NC_004087_CDS_0046 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 84.20 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_004087_CDS_0046 1 AcrIA3 0.52 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K V K E M S Q E V Q I K L Y P K Q K E L L I R F F S L A Q K D S D N D L C I P M Y T S E G K L F L F Q K (60)
MS YI IKVKEMS QI L KQKELL RFF +A D DLCIP Y S G L LF
AcrIA3 M S F Y I M Y I K V K E M S E Q K Q I S L R S K Q K E L L Q R F F E I A E V D E N G D L C I P L Y D S S G D L T L F K Q
NC_004087_CDS_0046 D A N -R -Y Q -Y -F G Y L R I K R L V D K N I F F I K I K R V K R D K K F L C I K E D I V D Y V R L L L E S (116)
D + Y RI RL+ K+IFFIK+K+VKRDKKFLC + ++D V+ +LES
AcrIA3 D -S R -K -Y Q -M Y A Y F R I L R L I K K Q I F F I K V K K V K R D K K F L C M H S N V I D Q V K S V L E S
NC_004087_CDS_0046 2 AcrVA2 0.44 View Alignment NC_004087_CDS_0046 M S L --Y -I Y D ---I K V ----K E -----M --------------------------------(60)
M K
AcrVA2 M H H T I A R --M N A F N K -A F A N A K D C Y K K -M Q A W H L L N K P K H A F F P M Q N T P A L D N G L A A L Y E
NC_004087_CDS_0046 -----------------------S Q E --V ------------------------------- (120)
+
AcrVA2 L R G G K E D A H I L S I L S R L Y L Y G A W R N -T L G I Y Q L D E E I I K D C K E L P D D T P T S I F L N L P D W C
NC_004087_CDS_0046 -Q -------I -K -L -Y P K Q K E L L I R F ---F S L A Q K D S D -N D L C I P M Y -T S E G K L F L -F Q K (180)
I + F ++ D+ T Q
AcrVA2 V Y V D I S S A Q I A -T -F D D G V A K H I K G F W A I Y D I V E M N G I N H D V L D F V V D T D T D D N V Y V P Q P
NC_004087_CDS_0046 ----D -----------A N -R Y Q Y -F G Y -L R I K R L V D K N I F F I K -I -----K -R V ------ (240)
A IK L+ ++
AcrVA2 F I L S S G Q S V A E V L D Y G A -S L F D D D T S -N T L I K G L L P Y L L W L C V A E P D I T Y -K G -L P V S R E
NC_004087_CDS_0046 ----------------K R D -K K F -L ----------C ---------------I -------- (300)
F
AcrVA2 E L T R P K H S I N K K T G A F V T P S E P F I Y Q I G E R L G S E V R R Y Q S I I D G E Q K R N R P H T K R P H I R R
NC_004087_CDS_0046 ---------K E D ---I --------V -D Y V R L L L E S (335)
+ S
AcrVA2 G H W H G Y W Q G T G Q A K E F R V R W Q P A V -F V N S G R V S -S
NC_004087_CDS_0046 3 AcrVA4 0.43 View Alignment NC_004087_CDS_0046 M S L Y -I Y D -I K V K E ---M -------------------------------------S -Q E -(60)
M + ++
AcrVA4 M Y E I K L -N D T L I H Q T D D -R V N A F V A Y R Y L L R R G D L P K C E N I A R M Y Y D G K V I K T D V I D H -D
NC_004087_CDS_0046 -----V -Q I -K -L ------------Y P --------------------------K ------ (120)
AcrVA4 S V H S D E Q A K V -S N N D I I K M A I S E L G V N N F K S L I K K Q G Y P F S N G H I N S W F T D D P V K S K T M H
NC_004087_CDS_0046 --Q -K E L L I R F F S L A ---Q -K --D -----------S ----D -----N D L C I P M Y -T S E G K (180)
++ + P
AcrVA4 N D E M Y L V V Q A L I R A C I I K E I -D L Y T E Q L Y N I I K S L P Y D K R P N V V Y S D Q P L D P N N L D L S E P
NC_004087_CDS_0046 L F L F Q K D A N R Y Q Y F G Y L R I K R L V -D K N I -F -F I K -I K R V K R D K K ---F L -C -I K E D I ---(240)
+ I KR R ++++I
AcrVA4 E L W A E Q V G E C -M R -------Y A -H N -D Q P C F Y I G S T K R E L R V N Y I V P V -I -G V R D E I E R V
NC_004087_CDS_0046 --V D Y V R L L L E S (252)
++ VR L
AcrVA4 M T L E E V R N L H -K
NC_004087_CDS_0046 4 AcrIE9 0.42 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K V -K E M S Q E V Q I K L Y P K Q K E L L I -R F F S L A Q K D S D N D L C I P M Y T S E G K L F L F (60)
M I + I F +
AcrIE9 M E ---M Q I -N S R K L -G R T -I -----------T -F S ----R ---------P ---G A S Y I F A
NC_004087_CDS_0046 Q K D A N R Y Q Y F G Y L R I K R L V D K N I F F I K I K R V K R D K K F L -C I -K -E -D -I -V D Y V R L L L E -(120)
G L R+ +
AcrIE9 D L N G ----K S G T L G C Q I -C S G G G T M G S T L S Y D G -D D Q -A Q -F -E -A -I -C R R W Y R A H V R G
NC_004087_CDS_0046 S (121)
AcrIE9 E
NC_004087_CDS_0046 5 AcrVIA5 0.42 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K V K E M S Q E V Q I K L Y P K Q K E L L I R F F S L A Q K D S D N D L -C I P M Y T S E G K L F L -F (60)
M K+ E++ + + K+ +
AcrVIA5 M E R -N F K K V T E N T G R K E V F K V M H D K V E I I N D ---F N -T N E K -R -E -A R I I F H D Q K I Y V I L
NC_004087_CDS_0046 Q K D A -N R -Y Q Y F G Y L -R --I K -R L V -D ----------K N I -F -F I K I K R V K R D K K F L C --(120)
+ N+ + + + KK
AcrVIA5 Y Q N L N F E E L K W L N F Y I L I Y G -N Q S Y G K N T F F E F K L N K N N L I -Y H L Q V W N I I E N K K --F K S
NC_004087_CDS_0046 -I K E D I V D Y V R L -L -L E S (138)
+V + +
AcrVIA5 K S I S L L V K A L S -S -K A G V
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;