3D Structure for NC_004087_CDS_0046 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold with pLDDT = 84.20 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see: Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_004087_CDS_0046 1 AcrVIA5 0.86 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K V K E M S Q E V Q I K L Y P K Q K E L L I R F F S L A Q K D S D N D L -C I P M Y T S E G K L F L -F (60)
M K+ E++ + + K+ +
AcrVIA5 M E R -N F K K V T E N T G R K E V F K V M H D K V E I I N D ---F N -T N E K -R -E -A R I I F H D Q K I Y V I L
NC_004087_CDS_0046 Q K D A -N R -Y Q Y F G Y L -R --I K -R L V -D ----------K N I -F -F I K I K R V K R D K K F L C --(120)
+ N+ + + + KK
AcrVIA5 Y Q N L N F E E L K W L N F Y I L I Y G -N Q S Y G K N T F F E F K L N K N N L I -Y H L Q V W N I I E N K K --F K S
NC_004087_CDS_0046 -I K E D I V D Y V R L -L -L E S (138)
+V + +
AcrVIA5 K S I S L L V K A L S -S -K A G V
NC_004087_CDS_0046 2 AcrIA3 0.85 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K V K E M S Q E V Q I K L Y P K Q K E L L I R F F S L A Q K D S D N D L C I P M Y T S E G K L F L F Q K (60)
MS YI IKVKEMS QI L KQKELL RFF +A D DLCIP Y S G L LF
AcrIA3 M S F Y I M Y I K V K E M S E Q K Q I S L R S K Q K E L L Q R F F E I A E V D E N G D L C I P L Y D S S G D L T L F K Q
NC_004087_CDS_0046 D A N -R -Y Q -Y -F G Y L R I K R L V D K N I F F I K I K R V K R D K K F L C I K E D I V D Y V R L L L E S (116)
D + Y RI RL+ K+IFFIK+K+VKRDKKFLC + ++D V+ +LES
AcrIA3 D -S R -K -Y Q -M Y A Y F R I L R L I K K Q I F F I K V K K V K R D K K F L C M H S N V I D Q V K S V L E S
NC_004087_CDS_0046 3 AcrIF14 0.84 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K V K E M S Q E V Q I K L Y P K Q K E L L I R F F ----S -L -A -Q K -D ------------S (60)
M I I + Q +++ L ++
AcrIF14 M K -K I E M I E I S Q N R Q N L T A F L H I S E I K A I N A K L A D G V -D -V -D K -K -S F D E I C S I V L E Q Y
NC_004087_CDS_0046 D -N D L -C I --P M -Y T -S E G K L F L F Q -K D A N R Y Q Y F G Y L R I K R L V D K N I F F I K -I -K R -V -(120)
+ R K
AcrIF14 Q A K Q -I -S N K Q -A S -E I F E ---T L A K -A N -K S F K I E K F R C S --H -G -Y N --E I -Y K -Y -S
NC_004087_CDS_0046 K R D K K F L C I K E D I V D Y V R L L ---L -E -S (148)
L + L
AcrIF14 P D H E A Y L F Y C K G G Q G Q L N K L I A E N G R F M
NC_004087_CDS_0046 4 AcrVIA1_Lse 0.84 View Alignment NC_004087_CDS_0046 M S L Y I Y D I K -----V -K E M ------------S -Q E -V Q ----I -K L ----Y P ----K ---(60)
M YI D+K Y
AcrVIA1_Lse M I Y Y I K D L K V K G K I -F E N L M N K E A V E G L I T F L K K -A E F E I Y S -R E -N Y S K Y N K W F E -M W K
NC_004087_CDS_0046 ----Q -------K E L L I R F F S L A Q K D S D N D L -C I P M --Y -T ---S -E -G --K L F L --F -Q (120)
+ ++ KD + I +
AcrVIA1_Lse S P T S -S L V F W K N Y S F R C H L L F V I E K D --G E C L G I -P A S V F E S V L Q I -Y L A D --P F A P D T K
NC_004087_CDS_0046 K -----D -------A N -R -Y Q -Y ---------------F G Y L -R I K -R L V -D -K ------(180)
+ + R+ K
AcrVIA1_Lse -E L F V E -V C N L Y E C L A D -V -T V V E H F E A E E S A W H K L T H N E -T E V -S K R V -Y -S K D D D E L L
NC_004087_CDS_0046 --N I F -F I K I -K R V K R D -------K -K -F L C I ----------------K -E ----D I V -- (240)
K+ I +
AcrVIA1_Lse K Y I P E F L D T -I A T N K K S Q K Y N Q I Q -G -K I Q E I N K E I A T L Y E S S E D Y I F -T -E Y V S N L Y R E
NC_004087_CDS_0046 -----D -Y -V -R L L L -E -S (259)
+L E +
AcrVIA1_Lse S A K L E Q H -S -K Q I L K E E L N
NC_004087_CDS_0046 5 AcrIIC2 0.84 View Alignment NC_004087_CDS_0046 M S L -Y I -Y D ------I -K -V -K E M -S Q E V Q I K L Y P K Q K E L L I R F F S L A -Q K D S D N D L ---(60)
MS I E V L+R D
AcrIIC2 M S K N N I F N K Y P T I I H G E -A -R G E -N D E F V V H T R ---Y P R F L A R K S ---F ----D D N F T G E
NC_004087_CDS_0046 ------C -I -P M Y -T -S -E G K --L F L F Q K D A N R Y Q Y F -G Y -L R I K -R L V D K N -I F F I K I - (120)
L ++ + + + + +
AcrIIC2 M P A K P V -N -G E -L G -Q -I G E P R R L A Y D S R -L -G L -W L S -D F I M L D N N K P K N M E D W L G Q L K
NC_004087_CDS_0046 ---K -R -V -K R D K K F L C I K E D I V D Y V -R L L L -E --S (156)
D + ED L
AcrIIC2 A A C -D -R -I A A D -D L -M L N E D -----A A D -L E G W D D
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;