3D Structure for NC_004087_CDS_0044 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.89 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_004087_CDS_0044 1 AcrID1 0.71 View Alignment NC_004087_CDS_0044 M E F E E L K S I V E K F F Q D Q T I V R M N L M L N K E I I V S Y N Q F E E I I K D G D L T Y R Y A E K N R T V -D F (60)
M EL ++ F + I L E+ +S + FE+++K D + + N F
AcrID1 M N Y K E L E K M L D V I F E N S E I K E I D L F F D P E V E I S K Q E F E D L V K N A D P L Q K V V G D N Y I T E T F
NC_004087_CDS_0044 --Y E Y R N N I H S I I N Y -F W K D N K V C I I E I D -F W R ---S R (98)
E N+ KD K+ ++E + +
AcrID1 E W W E F E N Q Y L E F E L D Y Y V K D E K I F V L E M H F W R K I R K L E
NC_004087_CDS_0044 2 AcrVIB1 0.55 View Alignment NC_004087_CDS_0044 M E F E E L ----K S I V -E K -F F Q D Q T I V R M N L M L N K E I I V S Y N Q F E E I I K D G D L T -Y R Y A E K (60)
M +L + + + +L + E +
AcrVIB1 M K D L D L S K L K G E E I A -Q W L L N N K K A T A I Q L -S S -E ------R --T -D ------T ----D -
NC_004087_CDS_0044 N R T V D F Y E Y R N N I H S I I N Y F W K -------------------------D ----N K ------(120)
+ II K +
AcrVIB1 D G F M H I L V H K D E Y V E I I Y S Y L K I D E D D V M Q N F T I Y S K R W G N I D N S Y F E L Q T F E G E I F T G E
NC_004087_CDS_0044 -V C --I I -E --I D F W -R S R (139)
+ + +
AcrVIB1 S D -K I L C G V L S L G D L T T L K
NC_004087_CDS_0044 3 AcrIF19 0.52 View Alignment NC_004087_CDS_0044 M -E F E E L K S I V E K F F Q D Q T I V R M N L M -L --N ----K E I I V S Y N Q F E E I I K D G D ---L ---(60)
M ++ + +S I
AcrIF19 M K P L H T -M ---N Y --D N N Q M S L V Y E S Y D E Y G F E Y S V K L K I S V R D Y R G -I D V S A F N A F P E W
NC_004087_CDS_0044 T Y -R Y A -E -K -N R T V D F Y E Y ----R -N N I H S I I N Y F W K D N K V C I I E I D F W R S R (113)
R E + +S+ C
AcrIF19 E -D T L -R -M -R D R V M S V E E I E N A M -I S R Y K S L F I A -P -P D --C T -Y E ---F D I
NC_004087_CDS_0044 4 AcrIIA4 0.51 View Alignment NC_004087_CDS_0044 M E F E E L K S I V E K F F Q D Q T I V R M N L M L N K E I I V S Y N Q F E E I I K D --G -D -L T Y R Y A E -K -N (60)
M ++ + + + L +
AcrIIA4 M N I N ---D L I R E I K N ---------K -D -Y T V K L S G T D S --N --S I -T -Q L I -I R V N N -D G
NC_004087_CDS_0044 R T -V D -F -Y E -Y R N ---N I H -S I I N Y F W K --------D N -K V C I I E I -D F W R -S -R (116)
V + + W I +
AcrIIA4 N E Y V I S -E -S E N E S I V E K F I S -A F K N G W N Q E Y E D E E E F Y N D M Q T I T L K S ---E -L N
NC_004087_CDS_0044 5 AcrIIA12 0.51 View Alignment NC_004087_CDS_0044 M E -F E E ---L K S I V E K F F Q D Q T -I V R M N L -M L --N -K E I -I V S Y -N Q F E E I I K D G D L T Y R (60)
M + ++ + + ++ + +E+ +Y E + D +
AcrIIA12 M S K T M Y K N D V I E L I K N A K T N N E E L L F T S -V -E R N -T R E A A -T Q Y F R C P E K H V S D A G V Y --
NC_004087_CDS_0044 Y A E K N R T V D F -Y E Y R N N I H S I I N Y F W K D N K V C I I E I D F W R S --R (104)
Y E D D + +
AcrIIA12 Y G E D F E -F D G F E I F -E -----------D D L I -Y T R S Y -D K E E L N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;