3D Structure for NC_003216_CDS_0028 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.68 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment NC_003216_CDS_0028 1 AcrIIA1 0.93 View Alignment NC_003216_CDS_0028 M S I K L L D E F L K K H S K T R Y Q L S K L T G I S Q N T L N D Y N K K E L N K Y S V S F L R A L S M C A G I S T F D (60)
M+IKLLDEFLKKH TRYQLSKLTGISQNTL D N K LNKY+VS LR LS G+S D
AcrIIA1 M T I K L L D E F L K K H D L T R Y Q L S K L T G I S Q N T L K D Q N E K P L N K Y T V S I L R S L S L I S G L S V S D
NC_003216_CDS_0028 V F I E L A E L E K S Y D D L A G F K H L L D K Y K L S F P A Q E F E L Y C L I K E F E S A N I E V L P F T F N R F E N (120)
V EL ++EK+ DDLAGFKHLLDKYKLSFPAQEFELYCLIKEFESANIEVLPFTFNRFEN
AcrIIA1 V L F E L E D I E K N S D D L A G F K H L L D K Y K L S F P A Q E F E L Y C L I K E F E S A N I E V L P F T F N R F E N
NC_003216_CDS_0028 E E H V N I E K D V C K A L E N A I T V L K E K K N E L I (149)
EEHVNI KDVCKALENAITVLKEKKNEL+
AcrIIA1 E E H V N I K K D V C K A L E N A I T V L K E K K N E L L
NC_003216_CDS_0028 2 AcrIB5 0.70 View Alignment NC_003216_CDS_0028 M S I K L L D E F L K K H S K T R Y Q L S K L T G I S Q N T L N D Y N K K E L N K Y S V S F L R A L S M C A G I S T F D (60)
M + L + T YQL +TG+ +T+ K + S+ +R++ + +
AcrIB5 M A -G F I K K Y L D S R G W T I Y Q L G N A T G L A H Q T I R S A D S K T V D Q L S A K N V R L I A E V F H F T A G E
NC_003216_CDS_0028 V F I E L A E L E K S Y D D L A G F K H L L D K Y K L S F P A Q E F -E L -Y C L -I -K E -F E S A ---N I E -V L (120)
+ E E+E FE + +
AcrIB5 I L D E F Y E I E E E ----------------I --T -N D E I -L K -E L -T T -V F E K H G H N T D -E I S
NC_003216_CDS_0028 P F T -F -N R F E -N E E --H V N -I E K D V C K A L E N ----A I ----T -V L K E ---K -K N E L -I (178)
E ++ D L L E+
AcrIB5 S -E L -L ----D -G E T I K L D M -T D D N I T K L A D A V N A T -E H F T -A Y L D S S T D Y M I V E A T Q
NC_003216_CDS_0028 3 AcrIB7 0.68 View Alignment NC_003216_CDS_0028 M S I K L L D E F L K K H S K T R Y Q L S K L T G I S Q N T L N D Y N K ---K -E L -N K Y S V S F L R A L S M C A G (60)
M LKK + + GI +++ ++ + L + +G
AcrIB7 M R -T -F K M L L K K Y N V E I K D V I Q K G G I D K S S I Y T L A N K E K S K P D S S R I T G A M L Q S V A L T V G
NC_003216_CDS_0028 I S T F D V F I E L A E L E K S Y D D L A G F K H L L D -K Y K L S F P A Q E -F -E -L -Y C L I K E ----F -E -(120)
I V +L+ LE +
AcrIB7 I D P G T V I N D L L Y L E Q E --V G --------I ----L A ----E -E -M -Q N -T L V N V I Q T -E G K
NC_003216_CDS_0028 S -A -N I E V L P F T F N R F -E N E E H V N I E K D V C K A L E N -A I T V L K E K K N E L -I (170)
+ LP + E+ E E E
AcrIB7 -E -A A L K F L P G F I F K V V E Q ------E ----E F K E -E F E R Y Y S E F I L A Y K G
NC_003216_CDS_0028 4 AcrIIC9 0.62 View Alignment NC_003216_CDS_0028 M S I K L ---L D E F L K -K H S K T R Y Q L -S K L T G I S Q N T L N D Y N K K E L N K Y S V S F L R A L S M C A G (60)
M+ + + E ++ K G+S+ +L+ Y E + + +
AcrIIC9 M T N L I M Q K I V E S E I T N N Y T S K K A F A E K Y L G V S N V S L S R Y L S G E -Q G L K A E T M N R V E A L F T
NC_003216_CDS_0028 I S T F -D V F I -E -L A E -L E K -S --Y D D L A -G ---F ----K -H -L -L -D -K -Y --------K (120)
+ L + + +
AcrIIC9 H Y E L C I I -K K -M L -L A S M H T P E F R E N P V G E F N R L K L E I A K -K -W -V -S -Y -N R S F L D A G T
NC_003216_CDS_0028 L -S --------------F P A ---Q ---E F E L Y C L I K E F E S A N I E V L P F T F N R F E N E E -H V (180)
+ L+++ +V+
AcrIIC9 -S -E L P C E L K I Q Y Q G P S I D P S Y Q K W S S A V M A V K L V H D N -P M M N D V I T L R L P G V S K N -R A -
NC_003216_CDS_0028 N I -E K D V C -K A L E N A I T -V L K E K K N -E L I (209)
++ + N E I
AcrIIC9 S A V P A -G K K -N R Q E W F E K H I D Q E F N A E -I
NC_003216_CDS_0028 5 AcrIIC7 0.60 View Alignment NC_003216_CDS_0028 M S I K L L D E F L K K H -S -K -----T R Y -Q L S K L T G -I ------S Q -N -T -L N D -Y N K -K E L N (60)
M++ ++ FLK + + L+ + L E
AcrIIC7 M N V I E A E K F L K P K T N T T T F K F L V D E K -L T A N L T G M K P I G R I D T Q -R -F L E -S H R -A S E F K
NC_003216_CDS_0028 K Y S V S F L R A L S M C A G I S T F D V F I E L A E L E K S Y -D -D -L -A G F K H L L D K Y K L S F P A Q E F E L (120)
+ L+ L G+++ + E+ +
AcrIIC7 I L L D N P L K E L L N Y Y G L T Q Y Y L Q K E V G L S Q S T V S -K -L -I S D N ----R P I G S ---F ---Q -
NC_003216_CDS_0028 Y C -L I K E F E S A N I E V L P F T F N R F E N E E H V N I E K D V C K A L E N A I T V L K E K K N E L -I (175)
+ A+ N + + ++ LKE +
AcrIIC7 F A V -L L K I A E A T ------------N -----------R S V G E V A D Q L K E F N D L R D A
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;