3D Structure for MW001214_CDS_0237 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.28 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MW001214_CDS_0237 1 AcrIIA7 0.78 View Alignment MW001214_CDS_0237 M K T K M S F -G E A L E V L K Q G M Q V S R S G W N G K N M F L F L K S S ------------D -A L A S ----(60)
M ALE LK G V R GWNGK MF+F + L
AcrIIA7 M T -F ---G -Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V -K S L P E S F K R
MW001214_CDS_0237 N -F -G -F -G -F -G -E -Y -V -N E -P -V F G D I I F I K T A D N R I -H A W V P S Q T D V L A E D W D I -V (120)
++ F + K AD I W+ SQTD LA DW I
AcrIIA7 -W -V -A -N -N -H -G -D -S -E T D R -I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V E
MW001214_CDS_0237 2 AcrIIA4 0.55 View Alignment MW001214_CDS_0237 M K T K M S F G E A L E V L K Q -G M Q V S R S G W N G K N M F L F L K S S D A L A S N F G F G F G E Y V N E P V F G D (60)
M +++ +K+ +V SG
AcrIIA4 M N -I N ---D L I R E I K N K D Y T V K L S G T -----------D -------S --------N -S I T Q
MW001214_CDS_0237 I I F I K T A D N R I H A W V -P -------S Q --------T -------D V -L -----A E D -W D I -V (120)
+I + D + + + +
AcrIIA4 L I I R V N N D G N E Y V I S E S E N E S I V E K F I S A F K N G W N Q E Y E D E E E -F Y N D M Q T I T -L K S E L N
MW001214_CDS_0237 3 AcrIF18 0.51 View Alignment MW001214_CDS_0237 M K T K M S F G E A L E V L K Q G M Q V S R S G -W N -G K N M F L F L K S S D A L A S N F G F G F G E Y V N E P V F G (60)
M WN G + G
AcrIF18 M T -T I K A A --Y -------I S K -D Q N W N D G T T T Y W -F D V --------------------N G
MW001214_CDS_0237 D I I F I K T A D N R I H A W V P -S ----Q --------T -D V -L A E D W D I -V (106)
+ + A V + I
AcrIF18 E T F G V V H G G E S W N A K V V D C D G A P -S D Q Y T V D Q -F N -I T E D M --I A E
MW001214_CDS_0237 4 AcrIIA24 0.49 View Alignment MW001214_CDS_0237 M K T K M S F -G -E -A L E V L K Q G M Q V -S R S G W N G K N M F L F L K -S S D A L A S N F G F G -F G E Y V N E (60)
MK L +K+ N K + + G
AcrIIA24 M K K --A -Q -Q -L -L K E I K T N N V S Y A I --M D E D N E I Y C N K E -T N N I M D I ----Y -G Y D N --
MW001214_CDS_0237 P V F G D I I F -I K T A -D N R I H A W ---V -------P --------S -Q T D V L A --E D W D I ----(120)
G + D I TD+ D+
AcrIIA24 -E N G H F Y G V Y G D V V D G Q I D S R Y F S D D A I L N A I D K L L F L G D P I K R T D L -P S D A D F K R T F F F
MW001214_CDS_0237 -V (122)
AcrIIA24 E E
MW001214_CDS_0237 5 AcrIIA12 0.48 View Alignment MW001214_CDS_0237 M K T K M S ---F G E A L E V L K -Q -G M Q V S R -S G W -N -G K N M F L F L K S S -D A L A S N F G F G F G E Y (60)
M M E++ +K + S N + + S G Y
AcrIIA12 M S K T M Y K N D V I E L I K N A K T -N N E E L L F T S V E R N T R E A A T Q Y F R C P E K H V -S D A G V ----Y
MW001214_CDS_0237 V -N E P V F G D I I F I K T A D N R I H A W V P S Q T D V L A E D W D I -V (99)
+ F D I + +
AcrIIA12 Y G E D F E F D G F E I -F -E D D L I Y T R S -Y D K E ----E ---L N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;