3D Structure for MN908685_CDS_0077 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 85.78 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MN908685_CDS_0077 1 AcrIE6 0.71 View Alignment MN908685_CDS_0077 M A -S L E D L K T ---E Q -E L L I R T I K A Q K E G A A A L V F G -S -S --------I E L E P V E N R L A E (60)
M E L + LL+ +K + +L + + +R A
AcrIE6 M N N D T E V L E Q Q I K A F E -L L A D E L K D R L P T L E I L S -P M -Y -T A V M V T Y D L I G K Q L A S R R A -
MN908685_CDS_0077 -V N R Q I A A L -----------E --D (84)
+ +
AcrIE6 E L I E I L E E Q Y P G H A A D L S I K N L C P
MN908685_CDS_0077 2 AcrIF23 0.57 View Alignment MN908685_CDS_0077 M A S L E D ----L K ------------------------------------------T -----(60)
M +
AcrIF23 M T N F Q T W L D S --A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T
MN908685_CDS_0077 ------------------E -Q -E L ------------L I -R T I K A Q -K E -G A A A L V F G S S - (120)
A +
AcrIF23 F G G R A L T G T A R Q K E W A E K -I -R A -E K V Q Q M N Q D Q A E M -A C D P S G -L L -T A A K F W I E N R -N
MN908685_CDS_0077 ----------I E L ----E ---------P V -E -N R L A E V N R Q I A A L -E ---D (171)
++A + AL
AcrIF23 D S A Q E I A G F V M Q Q K A L L -A Q H R S A K A A G -Q -A D K V A K I A A E Y N A L T A R W G F
MN908685_CDS_0077 3 AcrIIC4 0.54 View Alignment MN908685_CDS_0077 M -A ---S L E D L K -------T ----------E -------Q E -L L I R -T I K -A Q K -E -G A A A (60)
M + + + ++
AcrIIC4 M K I T S S N F A T I -A T S E N F A K L S V L P K N H R E P I K G L F K S A V E -Q F S S -A R D -F F K -N E N -Y
MN908685_CDS_0077 L -V -F -G -S -S -I E L -E -P V -E N R L -A E V N R Q I A A L ---E --D (103)
+ + +++ I ++
AcrIIC4 S K -E -L -A -E -K F -N K -E -A V N E -A V E K L Q K A I D L A E K Q G I Q F
MN908685_CDS_0077 4 AcrIF2-IC2 0.52 View Alignment MN908685_CDS_0077 M -A -S L ---E D L K ----T -E -Q -E L ------L I --R ---T --I K --A ---Q K E -G A A A L -(60)
M ++ + E+ + +L
AcrIF2-IC2 M A T K T A Q M I A Q Q H K D T V -A -A -C E A A E A I A I A -K D Q V W D G E G --Y T K Y T F -D -D N -S V L I
MN908685_CDS_0077 V F -G S S ----------------I -E L -E -P V E N R L -A -E -V N -R Q I A A L E -D (112)
+ + + + R + +E +
AcrIF2-IC2 Q S G T T -Q Y A M D A D D A D S I K G Y A D W L -D -D E A R S A E A -S -E I -E R L L E S V E E E
MN908685_CDS_0077 5 AcrIIA28 0.52 View Alignment MN908685_CDS_0077 M A ------S L E D L K -T ----E -Q E L L I R T I K A Q K -E --G A -A A L V F G S -S -------I --(60)
M + E+L Q L + + + + G
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E -K Q K E L F N S M H D F R S Q H A K E A --R I P G W S D K Y N K L E K -K M
MN908685_CDS_0077 --E L E P V E -N R L A E V N ------R Q -I A A -L -E -D (94)
+ E V + +
AcrIIA28 L S D F E E V T G I K Y D T L E S E L I W D N -L S N -K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;