3D Structure for MK448873_CDS_0035 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.52 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MK448873_CDS_0035 1 AcrIE6 0.73 View Alignment MK448873_CDS_0035 M E A Y K E R M V N E Y W E L M E R S S K L G S A I V Q K S Q D E L ------N -C P V E L L K A -Q Y S A M E T Y R (60)
M E + L + + E+ V ++
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L ---P T L E I L S P M Y T -A V M V T Y D L -I G K Q L A S R R A
MK448873_CDS_0035 N I L R V R A E I E ----G -I ---E --L (84)
++ + E +
AcrIE6 E L I E I L E E Q Y P G H A A D L S I K N L C P
MK448873_CDS_0035 2 AcrIIA28 0.64 View Alignment MK448873_CDS_0035 M E -A ----Y K E R ----M ----V N E Y -W E -L -M E R S S K L G S A I V Q K S Q D E ----L ----N -(60)
M + E E + S +
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E K Q K E L F N -S -M H D F R S Q H A K E A R -I P G W -S D K Y N K L E K -K
MK448873_CDS_0035 C P V E L L K A Q Y S A M E T Y R N I L R V -R A E I E G I -E --L (95)
+ ++ +T + L +
AcrIIA28 M L S D F E E V T G I K Y D T L E S E L I -W -D N L S N K F L Y N S
MK448873_CDS_0035 3 AcrIE1 0.62 View Alignment MK448873_CDS_0035 M E ---A -Y -K E R -----------M ---V N -E ----Y W E -L M E R S S K L G S A I V Q K S Q D E L -(60)
ME + + L + +
AcrIE1 M E K K L S D -A Q V -A L V A A W R K Y P D L R E S L E E -A A S I L S -L I V F Q A E T L S D Q A N E L A N Y I R R
MK448873_CDS_0035 N -C P V E L L K A Q Y S A M E T Y R N I L R V R A E I E --G -----I -----E -L (106)
E+ A ++ + V E+ G +
AcrIE1 -Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G -D A I D R D V D
MK448873_CDS_0035 4 AcrIIC4 0.61 View Alignment MK448873_CDS_0035 M E -A --Y K E R ---------M ----V N E ----Y W E L M E R S S K L G S A I V Q K S ----Q D E L -N (60)
M L S +
AcrIIC4 M K I T S S N F A T I A T S E N F A K -L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N -Y S K E L
MK448873_CDS_0035 C P V E L -L K A Q Y S A M E T Y R N I L R V R A E I E G I E L (92)
A A E ++ + GI
AcrIIC4 A E K -F N K E A V N E A V E K L Q K A I D L A E K -Q G I Q F
MK448873_CDS_0035 5 AcrIF23 0.60 View Alignment MK448873_CDS_0035 M E A Y K E -R -------M --V -N ----E ----------------------------------(60)
M + E
AcrIF23 M T N F -Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
MK448873_CDS_0035 ---------------------Y W E L --------M E R -S S K L G -S -A -I V Q -K S -Q -D E L N (120)
S L + N
AcrIF23 G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C -D P S G L -L -T -A A K -F -W I -E -N R N
MK448873_CDS_0035 -------C P V E ----L -L -K -A -Q -Y -S A M E -T Y R -N I L R V R A E I E G -I ---E --L (176)
V SA + A +
AcrIF23 D S A Q E I A G F V M Q Q K A -L -L -A -Q -H -R S A K -A A G Q A D K V A K I A A E Y N A L T A R -W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;