3D Structure for MK250028_CDS_0780 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.30 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MK250028_CDS_0780 1 AcrVA5 0.74 View Alignment MK250028_CDS_0780 M K I V K H I T E E P E Y T A V K L I T T D C -L G I I Q Y S F N D K D N Y V Y I Y S F S V E N H N R G K H I G T E L F (60)
MK + + + G I YS + + V I V + IG+ L
AcrVA5 M K -I E -L ------------S ---G -G Y I C Y S I -E -E D E V T I D M V E V T -T -K R Q G I G S Q L I
MK250028_CDS_0780 E Y C L N E I N S L D K K E I H L T V -N K ---N -N I Q L I N F Y K R Y G F I V V N D N Y E E Y Y V Y M K L N L (118)
+ + + I L + + LI FY F D + M+
AcrVA5 D M V K D V A R E V -G L P I G L Y A Y P Q D D S I S Q E D L I E F Y F S N D F E Y D P D D -V D -G R L M R -W S
MK250028_CDS_0780 2 AcrIB1 0.73 View Alignment MK250028_CDS_0780 M K I V K H I T E -----------------------------E ----------P --E -Y T A V K L (60)
M K + E + +
AcrIB1 M E -S K N L R K L L N E Y E E I D I N E M L K N F R S I K N S G T K N D I E I F L H E K A I K F E K S S I S S T Y V V
MK250028_CDS_0780 -I -T T D C L G I I Q Y S F -N D -----------------------------K -D -N Y V Y I Y S F S (120)
++ LG + + + + +
AcrIB1 F S E D N E I L G Y F T I A N R S L V I P K E N F G I L S K T Q Q K K L G N S A A I L K N G D L M -T S S F L L G Q L G
MK250028_CDS_0780 V E N -H N -R G K H I G T E L F E ----Y -C -L -N -E -I N S L D K K E I H L T V N K N N I Q L I N F Y K R Y G (180)
G EL + K I L N LI+FY G
AcrIB1 K N Y S D D I E N L I T G R E L L T F A Y D -L -F -L -K -I K E L I N V K Y I W L E C -Q N E P K L I S F Y Q N F G
MK250028_CDS_0780 F I V V N D N Y -E E Y Y V Y M K L N -L (201)
F + EE M
AcrIB1 F K M L E S L T S E E G L K V M I M E L K
MK250028_CDS_0780 3 AcrVIA2_new 0.40 View Alignment MK250028_CDS_0780 M K -I --V K H I T E ---------E -P E Y T A V K L I -T ------T ------D C L G I I Q -Y S F --(60)
MK I ++ + T D ++
AcrVIA2_new M K N I H Q K I Q --L N K L Q V K T V Q -N K G K D L L I N A P T G S G K T E A S L L A V S D A S K S V S Y L L P T V
MK250028_CDS_0780 -N D -K D ----------------------------------------------------N - (120)
+
AcrVIA2_new V S T N -V M Y L R L K R D Y K L N L S V Q T S T K K E I S N F A E G V H I K L E C P D F A L I D F I K T G K K T L G D
MK250028_CDS_0780 Y V Y I Y S F S V E N H N R G K H -I G -T E L F -E ---------------------------------(180)
+ F + + E
AcrVIA2_new T I I C D E F D H ----Y -P E M V -K S A -L M E Y K H T F S E T Q I I F V S A T L N K E S L M G I D L E E I A L D
MK250028_CDS_0780 ------------------------------------------------------------ (240)
AcrVIA2_new T E K N L I K Y K V Y P N D D F R M D D I I N N G K A Y G K K I G I I F N S I S Q L E C F I K P G E D F Y D D H F S K F
MK250028_CDS_0780 -------------------Y C -L -N E I N S -L -D -----------------K -K E I H L T V N (300)
N I D + ++
AcrVIA2_new K K G E N D Y I I H S Q V D D Y D K A L -A -E N A I V -N -N D F S V L I G T D S I S Y S I D V N -F D I L I M M A S
MK250028_CDS_0780 K N N I Q L I N F Y K R Y G F I V ----V ------N D -N --------Y -------------------(360)
++ I+ R +
AcrVIA2_new S E M A T N I Q R L G R C N R L N K H V T D Y N L Y F F G -S -Y L S D L K A P F I N E N V A F N N L E R I T S S H L C
MK250028_CDS_0780 ------------------E E Y --------------------------------------- (420)
E
AcrVIA2_new I S R K N I N E I K K E L P V S E I M E -Y I E V K K H V L D E E E S L R P I P F K V R R G I E K E V V K F N A K G L K
MK250028_CDS_0780 ------------------------------------------------------------ (480)
AcrVIA2_new Q T K V I K T Y Q T F N M M D L K Y A F C E E Y Y Y D K K N S R A L D V I Q Q F D F E N D W F D R G D F T V K L Y N L K
MK250028_CDS_0780 --------------------------------------------------Y -V Y M K -L -- (540)
+
AcrVIA2_new T E Q Q A L K Q L L L K L E E Y I E P E A P D E T D E D F Y Y R N P D I L L K Y T D Y D K L F I K G W T Y S I L S I D G
MK250028_CDS_0780 ----N -L (547)
+
AcrVIA2_new K T I Y -I A
MK250028_CDS_0780 4 AcrIF5 0.40 View Alignment MK250028_CDS_0780 M K -I -V K H I T E E P E Y T A V K L I T T D C L G I I -Q Y S F N D K D N Y V Y I Y S F S V E N H N R G K H I G T E (60)
M V +TE P + D +
AcrIF5 M S R P T V V T V T E T P R ----N ---P G S ---Y E -V N V E R -D G -K M V V G R A -R A G ----S D P G A
MK250028_CDS_0780 L F E Y C L N E I N S L D K K E I H L T V -N K N N I Q L -I -N F Y K R Y G F I V -V -N D N Y E E Y Y V Y M K L N L (120)
+ + + + + +N + F +
AcrIF5 A A A K A M Q M A M E W G S P N Y V I -L G --S N -K V L -A -F I ---P E Q L R -V -------------K M
MK250028_CDS_0780 5 AcrVIA1_Lse 0.39 View Alignment MK250028_CDS_0780 M K -I -V --K ---H I T E -----E -----------P E -------------------Y ----T (60)
M K +I E E E +
AcrVIA1_Lse M I Y Y I K D L K V K G K I F E N L M N K E A V E G L I T F L K K A E F E I Y S R E N Y S K Y N K W F E M W K S P T S S
MK250028_CDS_0780 A V K L I -T T D C L G I I Q Y S ---F N D ------------------------K D -----------(120)
+V + + D
AcrVIA1_Lse L V F W -K N Y S F R C H L L F V I E K D --G E C L G I P A S V F E S V L Q I Y L A D P F A P D T K E L F V E V C N L
MK250028_CDS_0780 --N ---Y -V Y -I Y S F S V E N H N -R -G -K H I G T E L F E ---------------Y C L N E I N S L D (180)
+ F +E + H TE+ L I +
AcrVIA1_Lse Y E C L A D -V -T V V E H F E A E E S A W H K -L T H N E T E V S K R V Y S K D D D E L L K Y I P E F L D T I A T N K
MK250028_CDS_0780 K K E I H L T V N K ----N N I Q L I N F Y K R --------Y ----G -F -I V V N D N Y E E Y Y V Y M K L N -(240)
K +++ N +++ Y Y K
AcrVIA1_Lse K S Q K Y N Q I Q G K I Q E I N K E I A T L Y E S S E D Y I F T E Y V S N L -Y -R E -S A K L E Q H S K Q I L K E E L
MK250028_CDS_0780 L (241)
AcrVIA1_Lse N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;