3D Structure for MH179480_CDS_0041 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.93 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MH179480_CDS_0041 1 AcrIE6 0.71 View Alignment MH179480_CDS_0041 L P E D V Q L V V V E L N Q -V -L -S -R -L K A L G P L V A N E Q E L L A A G ----A A Q E E V D L L K E Q F T F (60)
D ++ ++ L L ++ A+ DL+ Q
AcrIE6 M N N D T E V L E Q ----Q -I -K -A -F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S
MH179480_CDS_0041 M T G Y S E -T L Q ---K -R -L -A R -I ---G -L (89)
L A
AcrIE6 R R A E L I E I L E E Q Y P G -H -A A D L S I K N L C P
MH179480_CDS_0041 2 AcrIIC4 0.59 View Alignment MH179480_CDS_0041 L P -E -D -V Q -L ---------V ----V V -E L N Q V L S R L K A L G P L V A N E Q E L L -A A G A A Q E E (60)
+ K + + + E
AcrIIC4 M K I T S S N F -A T I A T S E N F A K -L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L
MH179480_CDS_0041 V D -L L K E Q F T F M T G Y S E T L Q K R L A R I -G -L (90)
++ KE + + + +
AcrIIC4 A E K F N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
MH179480_CDS_0041 3 AcrIF23 0.59 View Alignment MH179480_CDS_0041 L P E --D V Q -L ---V -------V -V -E L -------N -Q V L -S ------R L -----------(60)
+ E + +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D -L E T G I A Y D P S -Y N Y A A -N T R R A S L -S P R G I D A R A V A
MH179480_CDS_0041 -----------K A L G P -L V -A ------------N E Q E L L A A G ------------------ (120)
+ E A
AcrIF23 K T F G G R A L T G T A R Q K E W A -E -K I R A E K V Q Q M N Q D Q A E M -A --C D P S G L L T A A K F W I E N R N
MH179480_CDS_0041 A A Q E E V D L L K E Q F T F M T --------G -----Y S E T L Q K R L A R I ---G -L (169)
E+ Q + +
AcrIF23 D S A Q E I A G F V M Q Q K A L L A Q H R S A K A -A G Q A D K V A K I A A E Y N A L T A R W G F
MH179480_CDS_0041 4 AcrIE1 0.59 View Alignment MH179480_CDS_0041 L P ---E D -V Q -L -------------V V V -E ----L N Q V L S R L K A L G P L V A N E Q E L L A A G -(60)
D + + L+ ++ + L + +
AcrIE1 M E K K L S D A Q -V A L V A A W R K Y P D L R E S L E E -A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R Q G
MH179480_CDS_0041 -----A A Q E E V D L L K E Q F T F M T G Y S E T L Q -K R -L -A R I ---G -L (104)
A +D+ + + G + + +
AcrIE1 L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R -V -Y G D A I D R D V D
MH179480_CDS_0041 5 AcrIF3 0.51 View Alignment MH179480_CDS_0041 L P -E D V Q L -------V -V -V E L ------------------------N Q -V L S R L -K A L -G (60)
+ L
AcrIF3 M S S T I S D R I I S R S V I E A -A R F -I Q S W E D A D P D N L T E S Q V L A A S S F A A -R L H E G L Q A T -V L
MH179480_CDS_0041 P L V ----A ----------N E Q E L L -A A G -----------A -A Q E E V D L L K E ---------(120)
+ E LL A + +
AcrIF3 Q R L V D E S -N R D E Y R E F Q A W E E A L L N A D -G R V T S N P F A D W G W W Y R I A N V M L A T A S Q N V G V A
MH179480_CDS_0041 Q F T F M T G Y -S E T L Q K R L A R I ---G --L (147)
+ G Q R
AcrIF3 W G S H V H G R L M A I F Q D R F Q Q H Y E D -E E C
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;