3D Structure for MH028956_CDS_0264 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.43 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MH028956_CDS_0264 1 AcrIE6 0.72 View Alignment MH028956_CDS_0264 M E D -M ---R -H I T V -V V R L I E E V K E K I R N V ----E ---------T K ----E E S K K L K R E L (60)
M I L++E+K+++ ++ + EL
AcrIE6 M N N D T E V L E Q Q I K -A F E L L A D E L K D R L P T L E I L S -P M Y T A V M V T Y -D L I G K Q L A S R R A E L
MH028956_CDS_0264 F E L Q -K E -R ---Q A -I -N ---C S (83)
E+ A + C
AcrIE6 I E I L E E -Q Y P G H A A D L S I K N L C P
MH028956_CDS_0264 2 AcrIIC4 0.57 View Alignment MH028956_CDS_0264 M E -D M R ---H I T V --------------------V V R L I E -E V ----K E K I -R N V -E ----(60)
M I + + + ++ +N
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E -Q F S S A R D F -F K N E N Y S K E L
MH028956_CDS_0264 ----T K E E S K K L K R E L F E L Q K E -R Q A -I -N --C S (94)
+KE + L +
AcrIIC4 A E K F N K E A V N E A V E K L Q K A I D -L A E -K -Q -G I Q F
MH028956_CDS_0264 3 AcrIIA28 0.56 View Alignment MH028956_CDS_0264 M E -D --M R H I ----T V ---------V V R L I E E V K -E K I ----R N V -E -----------T K (60)
M + + + + + R
AcrIIA28 M K T I F T K K Q T E E L L N -D I S I E K Q K E L F N S M H D F R S Q -H A K E A R I -P G W S D K Y N K L E K K M L
MH028956_CDS_0264 E E S K K L K -R -E -L F E L Q K E ------R -Q A -I -N --C S (97)
+ + L + S
AcrIIA28 S D F E E V T G -I -K Y D T L E S -E L I W D N L S N -K -F -L Y N S
MH028956_CDS_0264 4 AcrIF23 0.55 View Alignment MH028956_CDS_0264 M E D -M R -----H I T V ---------------------------------------------(60)
M +
AcrIF23 M T N F Q T W L D S A D --I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T
MH028956_CDS_0264 -------------------------V ----V -------R L -I -E -E -V -K -E K I R -N V -- (120)
I N
AcrIF23 F G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L -L -T -A -A -K F W I -E N -R N
MH028956_CDS_0264 E -------T -K -E E S K K L K R -------E -----L -F E L Q K E R Q A I N -C --S (171)
+ +K L + E +A++
AcrIF23 D S A Q E I A G -F -V M Q Q K A L L A Q H R S A K A A G Q A D K -V A K I A A E Y N A L T A R W G F
MH028956_CDS_0264 5 AcrIF25 0.53 View Alignment MH028956_CDS_0264 M E --D M ---R ---------H I -T -V ------------------------------V V R L I (60)
M+ D V+ +
AcrIF25 M D N D D K K P D A L I H L R V P A E V -K -G -R W V K E S R L E G M K L T D W I T G R V E A K A L S I A E V L E E A
MH028956_CDS_0264 E E V K E K I R N V ------------------------------E -------------------(120)
+
AcrIF25 A A M A R S L E D -S P I F Y R N K L C A D G I V T I Q Q Q A A R F S A A T D D A T R L D A A L W A R E G Y Q L L S S G
MH028956_CDS_0264 -------------T -----K E E S K K -L K R E -L F E L Q K E ----R Q A I -N --C -S (173)
+ +
AcrIF25 L P D S Y S G A V P N E G R T G W V T A S Q M A R L -F G G E -A L W I E R C Q Q E L G G A G K E D -G R
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;