3D Structure for MGV-GENOME-3591540_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 92.22 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-3591540_CDS_0004 1 AcrIE6 0.72 View Alignment MGV-GENOME-3591540_CDS_0004 M T -K L D I I E Y A L H G A R E E Y L Y Y I N E Q R -V A E G T -------P Q E R S F S S L R H Q T Y L D -I K -(60)
M+ +++E ++ + + + + ++ I
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S R R A E L I -E
MGV-GENOME-3591540_CDS_0004 E L E K L K ----K E -Y ----A -E (81)
LE +
AcrIE6 I L E E Q Y P G H A A D L S I K N L -C P
MGV-GENOME-3591540_CDS_0004 2 AcrIIC4 0.63 View Alignment MGV-GENOME-3591540_CDS_0004 M -T K L D I I E ------------Y -------A L H ----G A R E E Y L Y Y I N E Q R V A E G ---T P Q (60)
M ++ A E +
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E -L A
MGV-GENOME-3591540_CDS_0004 E R S F S S L R H Q T Y L D I K E L E K L K K E Y -A -E (89)
E+ + + + L +
AcrIIC4 E K F N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
MGV-GENOME-3591540_CDS_0004 3 AcrIE1 0.62 View Alignment MGV-GENOME-3591540_CDS_0004 M -T K L D I I E --------------Y ----A -L -H -----------G A R E E Y L Y Y I N E Q R V A (60)
M KL + + + +N R
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E -A -A -S I L S L I V F Q A E T L S D Q A N E L A N Y I R R Q
MGV-GENOME-3591540_CDS_0004 E G T P Q E R S F ----S -S -L R -H Q T Y L D I K -E L E -K -L K ----K E Y ----A -E (111)
G E+ + +
AcrIE1 -G L E E A E G A C R N I -D -I M -R A K W V E V C -G E V -N -Q H G I R V Y G D A I D R D -V D
MGV-GENOME-3591540_CDS_0004 4 AcrIF23 0.58 View Alignment MGV-GENOME-3591540_CDS_0004 M T -K L D I I E ----------Y A L H -------------------------------------(60)
MT ++
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W --I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T
MGV-GENOME-3591540_CDS_0004 ------------------------G -A ----R E E Y L Y Y I N E -Q R V A E G T P ------Q E R S (120)
E + + +A +
AcrIF23 F G G R A L T G T A R Q K E W A E K I R A E K V Q Q -M N Q D Q A E M A C D P S G L L T A A -K F W I E N R N D S A Q E
MGV-GENOME-3591540_CDS_0004 F -S -S -L R H -Q -T -Y -L D -I K ----------------E L E K L K K E Y -A ---E (172)
+ + + A
AcrIF23 -I -A -G F V -M -Q -Q -K A -L L -A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-3591540_CDS_0004 5 AcrIF2-IC2 0.55 View Alignment MGV-GENOME-3591540_CDS_0004 M -T -K L D I I E Y A ---L H ----G A -------R E ------E Y L -Y Y I --------N E -Q R -V (60)
M T + I ++ Y Y +
AcrIF2-IC2 M A T K T A Q M I A Q Q H K D T V A A C E A -A E A I A I A K D Q V W D G E G Y -T K Y T F D D N S V L I Q -S G T T Q
MGV-GENOME-3591540_CDS_0004 A E -G -----T P Q E R S F S S L R H -Q T Y L -D -I K E L E K L K K E Y A -E (103)
+ + + E+E+L E
AcrIF2-IC2 -Y A -M D A D D A D S I K G Y A D W L D D E A R S A -E A S E I E R L L E S V E E E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;