3D Structure for MGV-GENOME-3591540_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.39 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-3591540_CDS_0002 1 AcrIE6 0.71 View Alignment MGV-GENOME-3591540_CDS_0002 M K K F N N V T E Y E -I L R G A M D Y F T R L W V R E N T L V E K A K K E G ---R -H ---D P I A E A R G A R Y A (60)
M E L F L + + ++ A
AcrIE6 M N -N -D ---T E V -L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S R R
MGV-GENOME-3591540_CDS_0002 A K M D E -I H -E A I ---V -E L -E -N --K (86)
A E E + +L N
AcrIE6 A E L I E I -L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-3591540_CDS_0002 2 AcrIIC4 0.61 View Alignment MGV-GENOME-3591540_CDS_0002 M K K -F N N V ------T E ---Y E I L R ----G A M D Y F T R L W V R E N T L V E K A K K E G -R ---H D -(60)
MK +N +L + V + + K
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L A E
MGV-GENOME-3591540_CDS_0002 P -I A -E A R G A R Y A A K M D E I H E A I V E L -E -N -K (92)
+ K + +++
AcrIIC4 -K -F N K E A V N E A V E K L Q K A I D L A E K -Q -G I Q F
MGV-GENOME-3591540_CDS_0002 3 AcrIE1 0.60 View Alignment MGV-GENOME-3591540_CDS_0002 M -K K -F ---N N V ----T ----E ----Y E I ----L -R -G -A -M -D -Y -F T R -L W V R E N T L V (60)
M KK + E + +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D -L R E S L E E A A S I -L -S -L -I -V -F -Q -A E T -L S D Q A N E L
MGV-GENOME-3591540_CDS_0002 E -K A K K E G R -H D P I A E A R G A R Y A A K M D E I H ----E A I ----V E L E -N --K (110)
+++ G A AK E+ ++
AcrIE1 A N Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D V D
MGV-GENOME-3591540_CDS_0002 4 AcrIF23 0.59 View Alignment MGV-GENOME-3591540_CDS_0002 M K K -F ---N ---N -V ----T E -----------Y E I ----L R -------------------(60)
M V +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T -R R A S L S P R G I D A R A V A K T F
MGV-GENOME-3591540_CDS_0002 -------------------G A M ----D Y F T R L W V R E N T L V E -K A K K -E -G --------R - (120)
+ + + + + A K
AcrIF23 G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L L T A A -K F -W -I E N R N D S A -Q
MGV-GENOME-3591540_CDS_0002 H D P I A E A R G A R Y A ------------A K M D E I H E A I V E L E N ---K (164)
+ K I L
AcrIF23 E I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-3591540_CDS_0002 5 AcrIIA28 0.55 View Alignment MGV-GENOME-3591540_CDS_0002 M K K -F N N V ----T E Y E -I -L R G A M D Y F T R L W V R E N T L V E -K A K K E G R ---H ----D P I A E (60)
MK F + + A + + +
AcrIIA28 M K T I F -T K K Q T E E L L N D -I S I E K Q K E L F N S M H D F R S Q H A K E A -R I P G W S D K Y N K L E K K M L
MGV-GENOME-3591540_CDS_0002 A R G A R -Y A -A K M D E I H -----E A I V E L -E N -K (92)
+K D + + +
AcrIIA28 S D F E E V -T G I K Y D T L E S E L I W D N L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;