3D Structure for MGV-GENOME-0378439_CDS_0300 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.79 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0378439_CDS_0300 1 AcrIIA21 0.72 View Alignment MGV-GENOME-0378439_CDS_0300 M D Y F T E Y P D F E S L I S E H K N S I E Y L K V E L N I E K F D I P D K F A -I I Y F D E L E A I L N Y K E E L Q Y (60)
MDY + I ++L+
AcrIIA21 M D Y D ---N E N ----------------------------Y -L -I ----P K I L L Q D ------
MGV-GENOME-0378439_CDS_0300 S D -I D L S R M -S S A Y I L L V L S Y I R L N M ----N ---R -S I D K P L C C Y R Q Y K T I S D E I G I S E R (120)
D S SA +LV ++ D + + S
AcrIIA21 -D F --Y S S -L -S A K D I L V Y A V L K D R Q I E A L E K G W -I D T D G S I Y L N F K L I E L A K M F S C S R T
MGV-GENOME-0378439_CDS_0300 Y V S R A V E I L D A L N I I K Y V P M K R R K Y T S N -G -K E K F I T T S K V F A D Y R H F K K Y G -D -N -H I I (180)
+ L+ +N+I
AcrIIA21 T M I D V M Q R L E E V N L I E R E R V ----D ---V -F -Y G Y S L P --------------Y -K -T -Y -
MGV-GENOME-0378439_CDS_0300 D Q N Y D Y K D E I S K Q V E L L E N I H I (202)
I +
AcrIIA21 ---------I ------N -E --V
MGV-GENOME-0378439_CDS_0300 2 AcrIA3 0.51 View Alignment MGV-GENOME-0378439_CDS_0300 M D Y F T E Y P D F E S L I S E H K -N S I E Y -L K V E L N I E K F D I P D K F A I I Y F D E L E A I L N Y K E E L Q (60)
M Y K + I
AcrIA3 M S F Y I M Y I K V -------K E -----M ------------S E Q K Q I S L R S K Q -----------
MGV-GENOME-0378439_CDS_0300 Y S D I D L S R M S S A Y I -L -L -V -L -S -Y -I R -L N M -N R S I D K P L C C Y R Q Y K T I S D E I G I S E R (120)
C Y + D +
AcrIA3 --------------K -E -L -L -Q -R -F -F E -I A E V D -E -N G D L C I P L Y D S S G D L T -L ---
MGV-GENOME-0378439_CDS_0300 Y V S R A V E I L D A L -N I I K -Y V P -M K R R K Y T S N G K E K F I T T S K V -F A D Y R H F K K Y G D N H I I D (180)
+ Y R + + ++ K+ +
AcrIA3 -F ---K Q D S -R K Y Q M Y -A Y F -R I L -R L I --------K K Q I F -F -I K V K K V K R D K -K -F L C
MGV-GENOME-0378439_CDS_0300 Q N Y D Y K D E I -S -K -Q -V -E -L -L -E -N -I H I (211)
+
AcrIA3 ---M H ----S -N -V -I -D -Q -V -K -S -V L E S
MGV-GENOME-0378439_CDS_0300 3 AcrVA2 0.48 View Alignment MGV-GENOME-0378439_CDS_0300 M D -Y F T E Y P D F ----E -S -L -I S -E -H -K N -S -I -E -Y L -K V E L N I -E K ---F D ---I --(60)
M F
AcrVA2 M H H T I A R M N A F N K A F -A -N -A -K D -C -Y -K K -M -Q -A -W H L -L N K P K H A F F P M Q N T P -A L
MGV-GENOME-0378439_CDS_0300 ----------------------------P D K -------------F --------A ------ (120)
AcrVA2 D N G L A A L Y E L R G G K E D A H I L S I L S R L Y L Y G A W R N T L G I Y Q L D E E -I I K D C K E L P D D T P T S
MGV-GENOME-0378439_CDS_0300 ----------I -------------I ---Y F D E L E A I L N Y K E E L Q Y S D I D L -S R M S S A Y -I (180)
AI E
AcrVA2 I F L N L P D W C V Y V D I S S A Q I A T F D D G V A K H I K G F W A I Y D I V E M --------N -G I ----N -
MGV-GENOME-0378439_CDS_0300 L L V L S Y I R L N -M N R S I -D K -P L C C Y R Q Y K T I S D E I ---G I -S -E -R Y -V S R A V E I L D A --(240)
VL + + ++ + ++ + + + + ++ L
AcrVA2 H D V L D F V V D T D T D D N V Y V -P Q P F I L S S G Q S V A E V L D Y G A S L -F D D D T S -N T L I K G L L P Y L
MGV-GENOME-0378439_CDS_0300 ----L -------N -I -I K Y --V P --M K R R K Y T S N G K E K -F -I T T S K V F A D -Y R ---H --- (300)
+ ++ + +
AcrVA2 L W L C V A E P D I T Y K G -L P V -S R E E L T R P K H S I N K K T G A -F -V T P S E P F I Y Q I G E R L G S E V R
MGV-GENOME-0378439_CDS_0300 -F K K Y -G D N -----H I -I D Q -N Y D Y ----K ----D E -I S K Q V E ---L --------L E N I H (360)
E +
AcrVA2 R Y Q S I I D G E Q K R N R P -H T K -R P H I R R G H W -H G Y W Q -G T G Q A K E F R V R W Q P A V F V N S G R V S
MGV-GENOME-0378439_CDS_0300 I (361)
AcrVA2 S
MGV-GENOME-0378439_CDS_0300 4 AcrIIA6 0.47 View Alignment MGV-GENOME-0378439_CDS_0300 M D Y F T E Y P D -F E S L I S E H K N S -I E Y L K V E L N I -E -K F -D -I -P -D K F A I I Y F D E L E A I L N (60)
M D +EY F N
AcrIIA6 M K --I -N D D I -K E ------L -I L E Y M S R Y F K F E N D -F Y -K -L -P -G I K -F T D A N W Q K F K N
MGV-GENOME-0378439_CDS_0300 Y K E E L Q Y S D I D L S R M S S A Y I L L V L S Y I R L N M -N R S I D K -P L C C -Y R Q Y K T I S D -E --I --(120)
D+ +M A + + L + I Y ++
AcrIIA6 G ----G ---T D I E K M G A A R V N A M L D C L F D D F E L A M I -G K A Q T N Y Y N D -N S L K -M -N M P F Y
MGV-GENOME-0378439_CDS_0300 G -I S E R Y V S R A V E I L D A -L -N I I K Y V P M K R R K Y T S N G K E K F I T -T S K V F -A D -Y R H F K K Y (180)
+ ++ L + R YT + I + A
AcrIIA6 T Y Y D M F K K Q Q L L K W L K -N -N -R D D V I G G T G R M Y T A S -G N -Y I A N A -Y L E V A -L E S S S L -G
MGV-GENOME-0378439_CDS_0300 -G D N H I -------I D ---Q N -Y D Y K D E I S K Q V E L L E N I H I (220)
G + + LENI
AcrIIA6 S G S Y M L Q M R F K D Y S K G Q E P I P S G R Q N R L E W I E N N L E N I -R
MGV-GENOME-0378439_CDS_0300 5 AcrIIA11 0.44 View Alignment MGV-GENOME-0378439_CDS_0300 M D Y F T E Y P D F E S L I S E H K N S ------I E Y L K V E L N -I E K F D I P D K F A I ----I -Y -F D E -(60)
M + + E E+ + F
AcrIIA11 M A -D M ---T L R Q F C E R Y R K G D F L A K D R E T Q I -E A G W Y D W F C D ---D K -A L A G -R -L A K -I
MGV-GENOME-0378439_CDS_0300 L E A I L N Y K E E L Q Y S D I D L S R M S S A Y I L L V L S Y I R L N M -N R S I D K P L C C Y -R Q Y K T I S D -E (120)
++ + YI N + +
AcrIIA11 W G I L K G --------------I T -------S D Y I L D N Y R V --------W F K N N C P M V G -P -
MGV-GENOME-0378439_CDS_0300 I G I S E R Y V S R A V E I L D A -L N I -I K -Y V P M K R R K Y T -S N G K E K F I T -T S K V ----------(180)
+ R + E + + + V
AcrIIA11 L Y D D V R -F E P L D E E Q --R D E L Y F -G V A -I D D ----K -----R R -E K -K Y V I F T A R N D Y E N
MGV-GENOME-0378439_CDS_0300 ---F -A -D ----Y R H F K K Y G D N ----H I --------I D Q N -----Y D Y K D E I S K Q V E L L E (240)
R F + + ++ E+L
AcrIIA11 E C G -F -N -N V R E V R Q F I N G W E D E L K N E E F Y K A R E K K R Q E -M E E A N N K F A E I M Q R A D E I L W
MGV-GENOME-0378439_CDS_0300 N -I H -I (246)
N +
AcrIIA11 N L -K E D
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;