3D Structure for MGV-GENOME-0372384_CDS_0246 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 90.28 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0372384_CDS_0246 1 AcrIIA7 0.67 View Alignment MGV-GENOME-0372384_CDS_0246 M N K Q T F D F -S E A L R R M K E G K K V R K G G R L R D E I L Y -Y D P ------------------K R --(60)
M AL K G+ V + G P
AcrIIA7 M -T -F ---G -Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R
MGV-GENOME-0372384_CDS_0246 ----------------N A I M V M F D G T N S V K K -T A M -A C I S I L A T D W E E V E G (111)
+A M ++ LA+DW V
AcrIIA7 W V A N N H G D S E T D R I K F T A Y L C M K A A D G T I V N G W -L A S Q T D M L A N D W V I V -E
MGV-GENOME-0372384_CDS_0246 2 AcrVIA3 0.54 View Alignment MGV-GENOME-0372384_CDS_0246 M N K Q T F D F S E A L R R M K E G K K -V R K G G R L R D E I L Y Y -D P K R ---N A -I M V M F D G T N S V K K T (60)
M F E + + ++ + + FD + +T
AcrVIA3 M F -K -E -F L E ---K C L R Y G N L Y I L E E T G D R K K V K R I S K R H G K V T E A S V L L F D S G T K --R T
MGV-GENOME-0372384_CDS_0246 A M A C I -S I L A T D W E E --V ---------E G (89)
+
AcrVIA3 T I N E -I Y L N S -Q G Y F I I R D Q K R L K L E K F K
MGV-GENOME-0372384_CDS_0246 3 AcrIIA4 0.51 View Alignment MGV-GENOME-0372384_CDS_0246 M N K Q T F D F S -E A L R R M K -E G K K V R K G G --------------R L R D E I L -Y Y -D P K R N A I M (60)
MN + ++R K V+ G + I
AcrIIA4 M N -I N ----D -L I R E I K N K D Y T V K L S G T D S N S I T Q L I I R V N N D -G N E Y V -I S E S E N E S I V
MGV-GENOME-0372384_CDS_0246 V -M F D -G T N S V K K T A M -A C I -S I L A T D ---W E E --V -E G (99)
+ + +D
AcrIIA4 E K F I -S A F K N G W N Q E Y E D E -E E -F Y N D M Q T I T -L K S E L N
MGV-GENOME-0372384_CDS_0246 4 AcrIIA12 0.50 View Alignment MGV-GENOME-0372384_CDS_0246 M N K Q T F ---D F S E A L R R M K -E -G K K V R K G G --R --L -R D E I L Y Y D P -K R -N A I M V -M F D G (60)
M T D E+++ K + R P K+ + + V
AcrIIA12 M -S K T M Y K N D V I E L I K N A K T -N N E E L L F T S V E R N T R E A A T Q Y F R C P E K H V S D A G V Y -Y G E
MGV-GENOME-0372384_CDS_0246 T N S V K K T A M A C I S -I L A T D W E E ------V -E G (92)
D
AcrIIA12 D -F E ----F D G F E I -F E D D L I Y T R S Y D K E E L N
MGV-GENOME-0372384_CDS_0246 5 AcrIF9 0.49 View Alignment MGV-GENOME-0372384_CDS_0246 M N K Q T F D F S E A L R R M K E -G --K K -V -----R ---K G ----G -R L -R D E I L Y Y D P K R N A I M (60)
M E+ + + + +
AcrIF9 M K -A A Y I I K E V Q -N I N S E R E G T -Q I E A T S L S Q A K R I A S K E -Q C F H G T V -M R I E T V N G L W L
MGV-GENOME-0372384_CDS_0246 V M F D G T N S V K K T A M A C I S I L A T D W E E V -E G (90)
+ + W
AcrIF9 A Y K E -D ----------G ----K R W V --D C Q
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;