3D Structure for MGV-GENOME-0358426_CDS_0056 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.28 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0358426_CDS_0056 1 AcrIE6 0.72 View Alignment MGV-GENOME-0358426_CDS_0056 M T R E E M I K T I I R M Y N E T A E A L E Y A -D -K E -Y N N D -K K ---N T ----K -K R D V Y R Y I V A Q E (60)
M+ + +++ + + T + + ++
AcrIE6 M N -N -D T E V L E Q Q I K A F E L L A D E L K -D -R L -P T L E I L S P M Y T A V M V -T Y D L I G K Q L A S R R
MGV-GENOME-0358426_CDS_0056 A V L N D L C -Y E L E I D D L I N D G L D D E -E -A (88)
A L ++ + D
AcrIE6 A E L I E I L E E -Q Y P G H A -A D L -S I K N L C P
MGV-GENOME-0358426_CDS_0056 2 AcrIE1 0.65 View Alignment MGV-GENOME-0358426_CDS_0056 M -T ----R -E E M I K -------T -------I ----I -R -M -Y -N -E -T -A -E -A -L E Y -A D (60)
M + + +
AcrIE1 M E K K L S D A Q -V A L V A A W R K Y P D L R E S L E E A A S I L -S -L -I -V -F -Q -A -E -T -L S D -Q -A
MGV-GENOME-0358426_CDS_0056 K E -Y N N D -K K --N T K K R D V Y R Y I V A Q E A V L N D L C Y E L E I D D -L -I N D -G L D D E -E A (116)
E N ++ + R I + A ++C E+ + D
AcrIE1 N E L -A N Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G -D -A I D R D V D
MGV-GENOME-0358426_CDS_0056 3 AcrIIC4 0.60 View Alignment MGV-GENOME-0358426_CDS_0056 M -T R -E E M I -K ---------T ----------I I R M Y N E T A E A L E Y A D K E Y N N D -K K ----(60)
M I +E A N+
AcrIIC4 M K I T S S N -F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L A
MGV-GENOME-0358426_CDS_0056 -N T K K -R -D V Y R Y I V A Q E A V L N D L C Y E L E I D D L I N D G --L D D -E E A (106)
+ L+ +
AcrIIC4 E K F -N K -E ----A V N E A V E K L Q K A I D L ---------A E K --Q G I Q F
MGV-GENOME-0358426_CDS_0056 4 AcrIF2-IC2 0.58 View Alignment MGV-GENOME-0358426_CDS_0056 M T --R E -E -M I -K T I I R M Y N E T A E A ---L E Y A D K -E Y N N -D K K --------------N T K (60)
M I + EA + A T
AcrIF2-IC2 M A T K T A Q -M -I A Q Q H K -D T V A A C E A A E A I A I A K D Q V W D G E G Y -T K Y T F D D N S V L I Q S G T T
MGV-GENOME-0358426_CDS_0056 K R D V -Y R Y -I V -A Q -E A V L N D L C Y E L E I D D ---L I N D G L D D -E E A (105)
+ + L I L+ EE
AcrIF2-IC2 Q Y A M D A D -D A -D S -I K G Y A D W L D D -E A R S A E A S E I E R L L E S V E E E
MGV-GENOME-0358426_CDS_0056 5 AcrIF2 0.56 View Alignment MGV-GENOME-0358426_CDS_0056 M T R E E M I K T I I R M Y N E T ------A -E A L E -Y A D K -E Y N -N ---D -K -K -------N ---T (60)
M + + Y
AcrIF2 M I A Q Q H K -D T V A A C E A A E A I A I A K D -Q V W D G ---E G Y -T K Y T F -D -D -N S V L I Q S G T T Q Y
MGV-GENOME-0358426_CDS_0056 -K K R D V Y R Y I V A Q E A V L N D L C Y E L E I D -D L I N D G L D D -E E A (101)
D I L D +E+ I L+ EE
AcrIF2 A M D A D D A D S I K G Y A D W L D D E A R S A E A -S -E I E R L L E S V E E E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;