3D Structure for MGV-GENOME-0350302_CDS_0129 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.30 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0350302_CDS_0129 1 AcrIIA21 0.79 View Alignment MGV-GENOME-0350302_CDS_0129 M R -K T N F L Q V D K D S F G -Q ---G L T S V E L L I L A Q V E E F E R N ----------G Q -L C Y I T N E (60)
M + + K L+ ++L+ A + + G+
AcrIIA21 M D Y D N E N Y L I P K I L L Q D D F Y S S L S A K D I L V Y A V L K D R Q I E A L E K G W I D T D G S I Y L N F K L I
MGV-GENOME-0350302_CDS_0129 Q F S I M F G E S L S K V K R S L D H L E E L G L I H R E T F S K R D G G K G K M R V I H Q G S K (109)
MF S + +LEE+ LI RE G
AcrIIA21 E L A K M F S C S R T T M I D V M Q R L E E V N L I E R E R V D V F Y G Y S L P Y -K T Y I N E V
MGV-GENOME-0350302_CDS_0129 2 AcrIA3 0.53 View Alignment MGV-GENOME-0350302_CDS_0129 M R K T N F L Q -V D K D S ---F G Q G L -T S -V E L L I L A Q V E E F E R N --G -Q L C Y I T N ---E Q F S I (60)
M V L + +L E LC ++
AcrIA3 M S F Y I M Y I K V K E -M S E Q K Q I S L R S -K -Q K E L L Q R F F E I A E V D E N G D L C I P L Y D S S G D L T L
MGV-GENOME-0350302_CDS_0129 M F -G E S L S K V K -R S L D -H L E -E -L G L I H R E T -F S K R D G G K G K --------M R V -------(120)
L +
AcrIA3 F K Q D S R ---K -Y Q M Y -A Y F -R -I L R -L --I K K ---Q I F F I K V K K V K R D K K F L C M H S N V I D
MGV-GENOME-0350302_CDS_0129 -I H Q G -S K (128)
+++
AcrIA3 Q V K S V L E S
MGV-GENOME-0350302_CDS_0129 3 AcrIE5 0.44 View Alignment MGV-GENOME-0350302_CDS_0129 M R K T N F L Q V D K D S F G Q G L T S V E L L I L -A Q V E E F E R N G Q L C Y I T N E Q F S I M F G E S L S K V K R (60)
M + + + ++ R
AcrIE5 M S -N D R N G ------------I I N Q -I I D Y T -----------G ----------T D R D H A E R
MGV-GENOME-0350302_CDS_0129 S L D H L E E L G L I H R E T F S K R -D G G K G K -------M R V ---I -H Q G S K (106)
+ L I + G + +
AcrIE5 I Y E E L R A D D R I Y F D D S ---V -G L D -R Q G L L I R E D V D L M A V A A E -I E
MGV-GENOME-0350302_CDS_0129 4 AcrVA3 0.42 View Alignment MGV-GENOME-0350302_CDS_0129 M R --K T -N -F L Q V D K -D S F G ------Q -G -------------------------------(60)
M + ++D
AcrVA3 M V G K S K I -D W Q S I D W T K --T N A Q I A Q E C -G R A Y N T V C K M R G K L G K S H Q G A K S P R K D K G I S
MGV-GENOME-0350302_CDS_0129 ----------------------L ---------T S V E L L I L A Q V E E F E R N G Q L C Y I T N E Q F (120)
+ T +
AcrVA3 R P Q P H L N R L E Y Q A L A T A K A K A S P K A G R F E T N T K A K T W ---T L K S P ----D N K -T Y T F T N L
MGV-GENOME-0350302_CDS_0129 S I M F G E S L S K V K --R S L -D -H L E -E -L -G L I -H R E T F S K R D G -G ----K -----G ---K -(180)
+ + + G + K
AcrVA3 M H F V R T N P H L F D P D D -V V -W R T -K -S -N G -V E W C R -A --S S -G L A L L A K R K K A P L S W K -G
MGV-GENOME-0350302_CDS_0129 M R V I H Q G --S K (191)
R+I +K
AcrVA3 W R L I S L T K D N K
MGV-GENOME-0350302_CDS_0129 5 AcrIF16 0.42 View Alignment MGV-GENOME-0350302_CDS_0129 M R K T N F L Q V D K D S F ---G -Q G ---------------------------------------(60)
M +
AcrIF16 M S L S D K K E Q K E A Y L D A L R I A -P L D R G V L K R I H A V N D N T L D K W L Y V A D R Y P T F R A C W E L W M
MGV-GENOME-0350302_CDS_0129 -------------------------------L -------T S V ----E L L I L A Q V E E F E R N (120)
AcrIF16 F Q R K R R V L I S R K L H V L I N R S T N R T I E A F E K T Y P P E E R V V G K S Y R D L V T E K G E R S A N M Y I -
MGV-GENOME-0350302_CDS_0129 -G Q L C Y I T N E Q F S I M F -G E S L S K V K R S L D H L E E L G L I H R E T F S K R D G G K G -K -M -R V I H Q (180)
+ SI + LG+ + K +
AcrIF16 I N G -E V V G A K D A S I L L G Y S ---S Y N T L Y A K M K R L G I Q P G D D I -S --H L K P E -K -R -G -R K
MGV-GENOME-0350302_CDS_0129 -G S K (184)
AcrIF16 K E C S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;