3D Structure for MGV-GENOME-0348172_CDS_0055 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 84.64 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0348172_CDS_0055 1 AcrIIA7 0.67 View Alignment MGV-GENOME-0348172_CDS_0055 M K T W Q A L K A A D E G K K I R R K C W M D -D V Y C F K G ----E P ---------------R -------(60)
M QAL + G+ + RK W F P +
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V A N N H
MGV-GENOME-0348172_CDS_0055 ---G K P -S L I T H R G W K C F D S T F D N V R L E D L -N R D D I F A T D W E I Y K E E E (108)
+ C ++ L + D A+DW E
AcrIIA7 G D S E T D R -I -K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V -I -V -E
MGV-GENOME-0348172_CDS_0055 2 AcrIF18 0.54 View Alignment MGV-GENOME-0348172_CDS_0055 M K T W Q A L K A A D E G K K I -R R K C W M D D V Y C F K G E P R G K P S -L I T H R G W K C F D S T F D N V -R L E (60)
M T +KAA K + G ++
AcrIF18 M -T --T I K A A Y I S K D Q N W N D -G -T T T -Y W F D V -N G E T F G V V H G G E -S W N A K V ----V D C -
MGV-GENOME-0348172_CDS_0055 -D L N R D D -I F A T D W E I Y K -E -E E (83)
+ D + + I E
AcrIF18 D G A P S D Q Y -T V D Q F N I T E D M I A E
MGV-GENOME-0348172_CDS_0055 3 AcrIIA12 0.53 View Alignment MGV-GENOME-0348172_CDS_0055 M K ---T -W Q A ---L K A A D -E -G K K I R R K C -W ---M D -D V Y C F K G E P R G K P -S L I T H R G W K (60)
M + +K A + + F+ P ++ G
AcrIIA12 M S K T M Y K N D V I E L I K N A K T -N N E E L L F T S V E R N T R E A A T Q Y F R C -P E ---K -H V S D A G V Y
MGV-GENOME-0348172_CDS_0055 C F D S T F D N V R L E D L N R D D I F A T D W E I -Y ---K E --E E (97)
+IF D I
AcrIIA12 -Y G E D ---F E F ---D G F E I F E D D -L I Y T R S Y D K E E L N
MGV-GENOME-0348172_CDS_0055 4 AcrIIA4 0.51 View Alignment MGV-GENOME-0348172_CDS_0055 M K T W Q A L K A A D E -G K K I R R K C -W ---M D D V Y C F K G E P R G K P S L I T -H -R G W K C -F ---D S (60)
M +++ + ++ + + G +I+ S
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T D S N S I T Q L I I -R V N N D G N E Y V I S E -S E N E -S I V E K F I S
MGV-GENOME-0348172_CDS_0055 T F -D N V R L E D L -N R D -D I F -A T -D W E I -Y K -E -E E (95)
F N + + F + I K
AcrIIA4 A F K -N G W N Q E Y E D E -E E -F Y -N D M Q T I T L K S -E L N
MGV-GENOME-0348172_CDS_0055 5 AcrIC4 0.50 View Alignment MGV-GENOME-0348172_CDS_0055 M K T W Q A L K A A D E G K K I R R K C W M D D V Y C F K G E P -R G K P S L I T H R G W K C F D S T -F D N V R L E D (60)
M + + ADE KIR + G ++
AcrIC4 M -D -N K I T P A D E E -K I R E W L N -C E E A -S V D N -D -G D V W V A V P M --------T -G H ----W
MGV-GENOME-0348172_CDS_0055 L N R D D I F A -T D W E I -Y K E E E (80)
L+ D+ +E
AcrIC4 L S -D E Q K -A -K Y I E W R G D E T
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;