3D Structure for MGV-GENOME-0344940_CDS_0011 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 83.96 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0344940_CDS_0011 1 AcrIIA29 0.65 View Alignment MGV-GENOME-0344940_CDS_0011 M R L S D K I E W L L T K S G L R P Y G I G K A L G L S T Q S I D P Y R K D L N K I K R M G L A R A E L L E D Y M G K L (60)
M+ S KI WLLT +G+ Y IGK + STQ +D Y+ D KI M L +AE L +Y L
AcrIIA29 M K P S Q K I K W L L T A T G I T T Y K I G K D I E E S T Q F L D R Y K N D P E K I G G M R L E K A E K L L E Y I S N L
MGV-GENOME-0344940_CDS_0011 T W E E V V E A R G Y K K T I Q L I Q I V D Y N D D E L V S L F E N I R F V C S L K W M D E N E E R L E I G V E T Y S P (120)
E+V+ + I + ++ E+ F + F+ L W E + +T S
AcrIIA29 R Q E D V I K T N W N -N Q --Q I L V Q N S T E K E I T K Y F N S Y P F A I K L N W I K P H K E M F I V N F D T T S N
MGV-GENOME-0344940_CDS_0011 G P F K N E P Y S V E E L A -F L R -E F N Q -E L K E D F V D Y I Q A C G E M I V T E S G -E V L Y Q V R E G R Y R I (180)
F+ PY + L F++ + +CG G VLY V +Y I
AcrIIA29 K T F R K Y P Y D L K N L Y F L -V D K N -R D K -M S Q F A E F L I I C G R K S H -F G G S R V L Y E V E G K K Y Q I
MGV-GENOME-0344940_CDS_0011 V Y T E Q D N Q R S G ----A P K I L D V E S V L E E A M P -------I -S L E K V L K R -L G ---G -----(240)
+ + + G + +++ ++ +++ P I L G
AcrIIA29 I F S I K R P S E L G P T I R L I N V V E T D T Y R D D L V P K I S E E E S I L R -S E D L D -L K G K R V S I K D S E
MGV-GENOME-0344940_CDS_0011 -R --E E Q E -G G (251)
AcrIIA29 L L E L M S I I D -N
MGV-GENOME-0344940_CDS_0011 2 AcrIIA14 0.62 View Alignment MGV-GENOME-0344940_CDS_0011 M R L S D K I E W L L T K S G L R P Y G I G K A L G L S T Q S I D P Y R K D L N K I K R M G L A R A E L L E D Y M G K L (60)
IE LL+ S L I K G+ +++I R + + GL AE L Y
AcrIIA14 L -K -K T I E K L L N -S D L N S N Y I A K K T G V E Q S T I Y R L R T G E R Q L G K L G L D S A E R L Y N Y Q K -E
MGV-GENOME-0344940_CDS_0011 T W E E V V E A R G Y K K T I Q L I -Q -I V -D Y N D D E L V -S -L F E N I R F V C S L K W M D E -N E E R L E I G (120)
+ K+ + + R + ++
AcrIIA14 -------I E N -M K S --V -K -Y -I S N -M ----S K -Q -E K G Y R V -Y V N V V N E -D T D K G F L F P
MGV-GENOME-0344940_CDS_0011 V E T Y S P G P F K N E P Y S V E -E L A F -L R E F N -Q E L K E D F V D Y I Q A C G E M I V T E S G E V L Y Q V R E (180)
+ N E Y+Q +
AcrIIA14 S --V P K E V I -E N -D ---K -I D E L -F --N F ----E H H K P Y V Q K A K S R Y D K -N -------G -
MGV-GENOME-0344940_CDS_0011 -G R Y R I V Y T E Q D N Q R S G A P K I L D V E -S -V L E E A M P I S L -E K V L K R L G G R E E Q E G G (235)
Y+IV + E+
AcrIIA14 I -G Y K I V -Q L -------------D -E -G -F ---Q K F I -E ----L N K E K M K E N L D Y
MGV-GENOME-0344940_CDS_0011 3 AcrIB5 0.62 View Alignment MGV-GENOME-0344940_CDS_0011 M R L S D K I E W L L T K S G L R P Y G I G K A L G L S T Q S I D P Y R K D L N K I K R M G L A R A E L L E D Y M G K L (60)
M + I L G Y +G A GL Q+I + + + L+ +
AcrIB5 M -A -G F I K K Y L D S R G W T I Y Q L G N A T G L A H Q T I R S A D S -K -T V D Q L S A K N V R L I A E V F H F -
MGV-GENOME-0344940_CDS_0011 T W E E V V E A R G Y K K T I Q L I Q I V D Y N D D E L V S L F E N -I R F V C S L -K W M D E -N -E E R L E I G V -(120)
T E+++ + DE++ + + I
AcrIB5 T A G E I L D E F Y E I --E E E -----I T N D E I L K E ---L -T T ---V F E K H G H N -T -D E --I S -S
MGV-GENOME-0344940_CDS_0011 E -T -Y S P G -P -F K N E P Y S V E E L A F L R E F N Q E L K E D F V D Y I Q A C G ---E M I V T E S G E V L Y Q (180)
+ +D ++A +
AcrIB5 -E -L L D G -E -T I -K L D M ---T --------D D N I T K L A D A V N A T E H F T -A Y L D S -------
MGV-GENOME-0344940_CDS_0011 V R E G R Y R I V Y T E Q D N Q R S G A P K I L D V E S V L E E A M P I S -L E K V L K R -L G G R E E Q E G -G (237)
E
AcrIB5 -----------------------S -----T -------D -----Y M I -----V -E A T Q
MGV-GENOME-0344940_CDS_0011 4 AcrIIC9 0.61 View Alignment MGV-GENOME-0344940_CDS_0011 M R L S D K ----I -E W L L T K S G L R P Y G I G -K A L G L S T Q S I D P Y R K D L N K I K R M G L A R A E L L E (60)
M + E +T + K LG+S+ S+ Y + +E
AcrIIC9 M -T N L I M Q K I -V E S E I T N N Y T S K K A F A E K Y L G V S N V S L S R Y L S G E ---Q G L K A E T M N R V E
MGV-GENOME-0344940_CDS_0011 D Y M G K L T W E E V V E A R G Y K K T I Q L I Q I V D Y N D D E L V S L ----F -E N -I R F V C S -L K W -M D E (120)
+ + + E L D
AcrIIC9 A L F T H Y E L C I I K K M L L A S --M H T P E F R E N P V G E F N R L K L E I -A K -K W V S Y --N R S -F L D A
MGV-GENOME-0344940_CDS_0011 N E E R L E I G V E T -Y S P G P F K N E P Y S V E E L A F L R E F N Q -E L K E D F V D Y I Q -A -C G -E M I -V T (180)
L + Y+ P +P Q V +
AcrIIC9 G T S E L P C E L K I Q Y Q G -P S I -D P S -----------Y Q K -W S -S A V M A V -K -L V H D -N P M --
MGV-GENOME-0344940_CDS_0011 E S G E V L Y Q V R E G R Y R I V Y T E Q D N Q R S G A P K I L -D V -E -S V L E E A M P I S L E K V L K R L G G R E (240)
+V+ G + N S + E K++
AcrIIC9 -M N D V I T L R L P G V S K -------N R A S A V ---P A G -K -K --------N R Q E W F E K H I D Q E F
MGV-GENOME-0344940_CDS_0011 E Q E G G (245)
AcrIIC9 N -A E I
MGV-GENOME-0344940_CDS_0011 5 AcrIIA1 0.60 View Alignment MGV-GENOME-0344940_CDS_0011 M R L S D K I E W L L T K S G L R P Y G I G K A L G L S T Q S I D P Y R K D L N K -I K R M G L A R A E L L E D Y M G K (60)
M ++ L K L Y + K+ G+S++++ + + + + L G
AcrIIA1 M -T I K L L D E F L K K H D L T R Y Q L S K L T G I S Q N T L K D Q N E K ---P L N K Y T V S I L R S L S L I S G L
MGV-GENOME-0344940_CDS_0011 L T W E E V V E A R -G Y K K T I Q L I Q I V D Y N D D E L V S L F E N I R F V C S L K W M D E N E E R L E I G V E T Y (120)
+ +V+ K
AcrIIA1 -S V S D V L F E L E D I E K ------N --------------------------------------
MGV-GENOME-0344940_CDS_0011 S P G P F K N E P Y S V E E L A F L R E F N Q -E L K E D F V D Y I Q A C G E M -I -V -T -E -S G -E V L Y Q V -R (180)
F + LY + +
AcrIIA1 ------------------S ----D -D L A G F K H L L D K Y K L -S -F -P -A -Q -E F -E L Y C L I K
MGV-GENOME-0344940_CDS_0011 E ---G R Y R I V Y T -E ----Q D N Q R -S G A P K I L D V E S V L E E A M P -I -S -L -E -K V L K R L G G R (240)
E ++ +N + ++ ++ ++ L +
AcrIIA1 E F E S A N I E V L P -F T F N R F -E N E -E --H --V ----N I K K D V C -K -A -L -E -N -A I T V L K E K
MGV-GENOME-0344940_CDS_0011 E E Q E G G (246)
AcrIIA1 K N E -L L
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;