3D Structure for MGV-GENOME-0344575_CDS_0005 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.84 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0344575_CDS_0005 1 AcrIIA27 0.70 View Alignment MGV-GENOME-0344575_CDS_0005 M N S Y N I Y E --------E --N H Y E T V L Y H A I A R D E D H V R E L A E E A G I N L -------E G L T I (60)
M + NI ++++Y++ A+ + A E LT+
AcrIIA27 M K T F N I I V S E S A N L K E H S S E L V D N I I Y K V E A K N R R E A F K K A R E E Y S F S S K W K F N M R D L T A
MGV-GENOME-0344575_CDS_0005 D L E R S N V K D Q M G R P Y S A M I E D -A -V -V R (88)
++ + GR Y +
AcrIIA27 I D --N T H R R A W G R R Y -L ---R V -E -E -A
MGV-GENOME-0344575_CDS_0005 2 AcrIE2 0.64 View Alignment MGV-GENOME-0344575_CDS_0005 M N S Y N I Y E -E --N ---H -Y E T -V L Y H A I A R D E D H V R E L A E E A G I -N L E G L T I D L E R -S N -(60)
MN+Y I ++ ++ +A + EGL SN
AcrIE2 M N T Y L I D P R K N N D N S G E R ---F T --V D A V D I T A A A K S A A Q Q I L G E E F E G L V Y R E T G E S N G
MGV-GENOME-0344575_CDS_0005 --V ---K D Q -M G R P Y S -A M I E --D -A -V V R (90)
G + +
AcrIE2 S G M F Q A Y H H L H G T N R T E T T V G Y P -F H V M E L
MGV-GENOME-0344575_CDS_0005 3 AcrIC9 0.61 View Alignment MGV-GENOME-0344575_CDS_0005 M -N ---S -Y -N I Y E E N H Y E T V L -Y H A I A R D E D H V R E L A E E A G I -N L E G L T I D L E R --S N V (60)
M + S I ++L D D+ + + N+ + + +
AcrIC9 M E T K M T S F -Y K I T A Y -N S -Q A L Y F W G T D A D V D R Y V D W L N R D R E I N V Y A A E A -I P E A E W A Q
MGV-GENOME-0344575_CDS_0005 K D Q -------M -G -R P Y S A M I E D A V -V R (88)
+ A
AcrIC9 Y E G R D D V L S G E E -C -G W D D F M S -A -E -A
MGV-GENOME-0344575_CDS_0005 4 AcrIIA20 0.59 View Alignment MGV-GENOME-0344575_CDS_0005 M N S Y N I Y E E N -H Y E T V L Y H -A I A R D E D H V R E L A -E -E A -G I N L E G L T I D L E R S N V K -D --(60)
M +Y + E + + A + +
AcrIIA20 M K N Y E V T N E V K N L ----N T Q -----V E T I G Q -A V -D -L Y K E Y G S N T I V W S I -----D -K N
MGV-GENOME-0344575_CDS_0005 --Q -M G R P ----Y S A M I E D -A V V R (84)
+E V++
AcrIIA20 E D -L -I D E V T E L V A E Y A E K G T V I K
MGV-GENOME-0344575_CDS_0005 5 AcrIIA15 0.57 View Alignment MGV-GENOME-0344575_CDS_0005 M ----------------------------------------------------------N (60)
M
AcrIIA15 M R K T I E R L L N S E L S S N S I A V R T G V S Q A V I S K L R N G K K E L G N L T L N S A E K L F E Y Q K E M E K V
MGV-GENOME-0344575_CDS_0005 -S Y N I Y E E -N -H Y -E T V L Y H A I A R D E D H V R E L A E E A -G I --N ------L ----------E (120)
+ +Y + Y A + V + G +
AcrIIA15 D T W I V Y R G R T A D -M N -K S Y I A E G S T Y E E V Y N N F V D K Y G Y D V L D E D I Y E I Q L L K K N G E N L -
MGV-GENOME-0344575_CDS_0005 -G L T I D L E R --------------S -N V --------K -D Q M G R P -Y S A M I -E D A V --V R (178)
+ + S +
AcrIIA15 D D Y D V --D S D G I N N Y D K L D E F R E -S -D Y V D L E D Y D Y R -E L F E N S S S Q V Y Y H E F E I T H E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;