3D Structure for MGV-GENOME-0343943_CDS_0041 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.05 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0343943_CDS_0041 1 AcrIE6 0.70 View Alignment MGV-GENOME-0343943_CDS_0041 M T R E E M I G I I I K M Y N E T A E A L E K A D -R E -Y -N -N -D -K K ---N A K K R E V -Y R Y -V A A -Q -(60)
M+ ++ +++ +
AcrIE6 M N -N -D T E V L E Q Q I K A F E L L A D E L K D -R L -P -T -L -E I L S P M Y T A V M V T Y D -L I G K -Q -L
MGV-GENOME-0343943_CDS_0041 E A V L S D L C Y E L E I D ---D -L I D D G L D D E -E -A (92)
+L LE + D
AcrIE6 A S R R A E L I E I L E E Q Y P G -H -A A D L -S I K N L C P
MGV-GENOME-0343943_CDS_0041 2 AcrIE1 0.61 View Alignment MGV-GENOME-0343943_CDS_0041 M -T ----R -E E M I G -----------I ----I ----I -K -M -Y N -E -T -A -E -A -L E K A D R (60)
M + + +
AcrIE1 M E K K L S D A Q -V A L V A A W R K Y P D L R E -S L E E A A S I L -S -L -I V -F -Q -A -E -T -L S D -Q A N
MGV-GENOME-0343943_CDS_0041 E Y N N D -K K --N A K K R E V Y R Y V A A Q E A V L S D L C Y E L E I D D --L -I D D G L D D E -E A (114)
E N ++ + R + + A ++C E+ D + D
AcrIE1 E L A N Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R -V Y G D -A I D R D V D
MGV-GENOME-0343943_CDS_0041 3 AcrIIC4 0.59 View Alignment MGV-GENOME-0343943_CDS_0041 M -T -R E E M I G ---------I ----------I -I K M Y N E T A E A L E K A D R E Y N N D -K K ----(60)
M + + +E A N+
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P -I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L A
MGV-GENOME-0343943_CDS_0041 -N -A K K R -E V Y R Y V A A -Q E -A -V L S -D L C Y -E L E -I -D D L I D D G L D D -E -E A (112)
+ + + ++
AcrIIC4 E -K -F N K E --------A -V N -E -A V E -K L Q K -A I D -L ---A E K ---Q G I Q -F
MGV-GENOME-0343943_CDS_0041 4 AcrIIA28 0.56 View Alignment MGV-GENOME-0343943_CDS_0041 M T ---R E -E ----M I G I -I I K M Y N E T A E A L E K A D R E Y N N D K K ----N A K K R E V Y R Y -V A A (60)
M + I E + + + K + + +
AcrIIA28 M K T I F T K K -Q T E E L L N D I S I E K Q K E L F N S M H D F R S Q H A K E A R I P G W S D K Y N K L E K K M L S D
MGV-GENOME-0343943_CDS_0041 Q E A V L S D L C Y E L E I D D -L -I D D G L D D E ---E A (92)
E V LE + D L
AcrIIA28 F E E V T G I K Y D T L E S E -L -I -W D N L S N K F L Y N S
MGV-GENOME-0343943_CDS_0041 5 AcrIF2-IC2 0.55 View Alignment MGV-GENOME-0343943_CDS_0041 M T R E E M I G I I I K M Y N E T A E A ------L E K A D -R E Y N N D K K ----------------N A K K (60)
M + I+ +T+ A + A
AcrIF2-IC2 M A T -K T A Q M I A Q Q H K D T V A A C E A A E A I A I A K D Q V W D -G E -G Y T K Y T F D D N S V L I Q S G T T Q
MGV-GENOME-0343943_CDS_0041 R E V Y -R Y V A -A -Q E -A V L S D L -C Y E L E I D D ----L I D D G L D D -E E A (106)
A + I+ L+ EE
AcrIF2-IC2 Y A M D A -D D A D -S -I K G Y A D W -L D D -E A R S -A E A S E I E R L L E S V E E E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;