3D Structure for MGV-GENOME-0342067_CDS_0065 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 88.00 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0342067_CDS_0065 1 AcrIB9 0.70 View Alignment MGV-GENOME-0342067_CDS_0065 M N N S V E T K K A E V R K N I E N M F D S A T K K V K N I I S V C -P -D W E V E G I -D -L ----G Y K S L -I V (60)
MN + + +NI + + + + D E + D S +
AcrIB9 M N K F A F E N D K Y L E R N I K A V V E K I A R D F N L H L K S K Y S K D C E F T V V A D N -S F D N I E N S T I F L
MGV-GENOME-0342067_CDS_0065 H L N L K G -V E R -D R D L V I R Y Q A K V G N I Q E E S F D T N V A C C -G S -F D L L D A N D N L K Y --Y -T A (120)
+ D+ + + +
AcrIB9 E I K R N D G K A C Q D H H I -Y A E Y E C D --E D ---D N E --Y I -A -L T V K F Y -G --S S A S N Q -I N T
MGV-GENOME-0342067_CDS_0065 V G D I L N H ---K D M L S L L K E T M V Y F T ----N K I I -E L R K E ---------------------(180)
V I + +S + K E
AcrIB9 V Q G I K S S K Y A S C I V S D T D N Q L S K S I H E L N L K K E K E Q Q E -A W N K K E A E Y A R K K Q A Y V S Q S Q
MGV-GENOME-0342067_CDS_0065 ----------------Y D -K -L --D K E D (208)
Y
AcrIB9 R E K Y E D I F D L P F D F Y D Y I D -K K E Q G L -I
MGV-GENOME-0342067_CDS_0065 2 AcrIB2 0.61 View Alignment MGV-GENOME-0342067_CDS_0065 N /A (3)
N/A
AcrIB2 N /A
MGV-GENOME-0342067_CDS_0065 3 AcrIIA5 0.60 View Alignment MGV-GENOME-0342067_CDS_0065 M N N S V E T K ---K -A E --V R K N -I E N M F D S A T K K V K N I I S V C P D W E V E G I D L G Y K S L I V H L (60)
M + + ++ + W + + +
AcrIIA5 M A Y G K S R Y N S Y R K R S F N R S N K Q -R R E Y A Q E M D R L E K A F E N L D G W Y L S S ---M K -D S A Y K D
MGV-GENOME-0342067_CDS_0065 N L K G V E R D R D L V I R Y Q A K V G N I Q E -E S F D T N V A C C -G S -F D L -L D A -N D N L K Y Y T A V G D -(120)
+ IR + + D L D
AcrIIA5 -F -----G K -Y E I R L S N H S A -D --N K Y H D -L E N --G R -L I V N I K A -S K --L N F V ----D I
MGV-GENOME-0342067_CDS_0065 I L N H K D -M L S L L K E T M V -Y F T -N K I --I E L R K ---E ------Y D K L D K E -D (171)
+ + E K I + + K KE
AcrIIA5 -I -E -N K L -D K I I E K I D K L -D L D K Y R F I N A T N L E H D I K C Y Y K G F K T K K E V I
MGV-GENOME-0342067_CDS_0065 4 AcrIIA11 0.56 View Alignment MGV-GENOME-0342067_CDS_0065 M N -N S V E T K K A E V R -----K ----N -----I ----E -N ----M -F -D -S -A T K K V K N I I S (60)
M ++ + R + K+ I+
AcrIIA11 M A D M T L R Q F C E R Y R K G D F L A K D R E T Q I E A G W Y D W F -C -D D K A -L -A -G -R -L A K I W G I L K
MGV-GENOME-0342067_CDS_0065 V C P D -W E V E G I D L ------------G -Y -K -S L I V H L N L K G V E R -D R D L V I R Y Q A K V G N I (120)
++ + L D A
AcrIIA11 G I T S D Y I L D N Y R -V W F K N N C P M V G P -L -Y -D D V R F -E P L D E E Q -R D E L -Y F G V -A I -D D K
MGV-GENOME-0342067_CDS_0065 Q E -E S F D T N ---V A C C G S F D L L D A N D N L K Y Y T -A V G -D I L N H -------K D M L S L L -K -E (180)
+ ++ L + E
AcrIIA11 R R E K K Y V I -F T A R N D Y E N E C G F N N V R E V R Q F I N G W E D -E L K N E E F Y K A R E K K R Q E -M -E E
MGV-GENOME-0342067_CDS_0065 T -M -V -Y -F -T -N K I -I -E L -R -K E -Y -D K L D K E D (215)
KED
AcrIIA11 -A -N -N -K -F -A E I -M -Q R -A -D E -I -L W N -L K E D
MGV-GENOME-0342067_CDS_0065 5 AcrIF4 0.55 View Alignment MGV-GENOME-0342067_CDS_0065 M N N S V E T K K A E V R K N I E N -M F D S A T K K V K N I I S V C P D W E V E -G I D L G Y K S L I V H L N L K G V (60)
M + K + I+ V ID +
AcrIF4 M M T I ---S K T D ----I D C Y -----L Q T -----------Y V -V -I D P V S N G W Q W G I D -E N -
MGV-GENOME-0342067_CDS_0065 E R D R D L V I R Y Q A K V G -N I Q E E S F D T N V A -C C G S F D L L D A N D N L K Y Y T -A V G D I L N H K D M L (120)
G + G + ++ + K+
AcrIF4 G -----------V G G A -L ----------H -H G R V E M V E G E N G Y F -G -L R G A T H P T E K E A M
MGV-GENOME-0342067_CDS_0065 S L L K E T M V Y F T N K I I -E L R -K E ---Y D K L D K E D (153)
++ + ++ + +K
AcrIF4 A A A L G Y L W K C R Q D L V A I -A R N D A I E A E K Y R A K A
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;