3D Structure for MGV-GENOME-0340913_CDS_0013 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.06 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0340913_CDS_0013 1 AcrIIA7 0.74 View Alignment MGV-GENOME-0340913_CDS_0013 M K F S E A L E H A R Q G A K I A R E G W N G K G M F V F L V N G D S -I K V A I -H E A --------------Y (60)
M F ALE ++ G +AR GWNGKGMF+F DS I +
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V A N N -
MGV-GENOME-0340913_CDS_0013 -G D P T K D G Y D V L D F L M M F T A Q Q T L -V P W L A S Q T D I L A E D W D V -L (104)
GD D L M A T+ WLASQTD LA DW +
AcrIIA7 H G D S E T D R I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V E
MGV-GENOME-0340913_CDS_0013 2 AcrIIA4 0.59 View Alignment MGV-GENOME-0340913_CDS_0013 M K F S E A L E H A R Q -G A K I A R E G W -N -G K -G -M F V F L V N G D S I K V A I -H E A Y G D P T K D G Y D V (60)
M ++++ +++ + G + + + N + V I + +
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T D S N S I T -Q L I I R V N N D G N E Y V -I S E -S E N E ------S I
MGV-GENOME-0340913_CDS_0013 L D F -L M M F T A Q Q T L V P W L A S Q T D I L ---A -E -D --W D V -L (100)
++ + F + +
AcrIIA4 V E K F I S A F -K -N G W N Q E Y E D E E E F Y N D M Q T -I -T L K S E L N
MGV-GENOME-0340913_CDS_0013 3 AcrIF18 0.57 View Alignment MGV-GENOME-0340913_CDS_0013 M K F S E A L E H -A R Q G A K -I A R E G W -N G -K G -M F V F L V N G D S I K V A I H E A Y -G D --P T K D G Y (60)
M ++ N F VN ++H
AcrIF18 M T T I --K -A A -Y ----I -S K D Q N W N D G T -T T Y W F D V N -G E T F G V V H G -G E S W N A K V ----
MGV-GENOME-0340913_CDS_0013 D V L -D F L M -M -F T A Q Q -T L V P -W L A S Q T D I L A E D W -D V L (99)
+ + Q T V + D +
AcrIF18 --V D C -D G A -P -S D Q -Y T -V D Q -F N I T E D M I ----A --E
MGV-GENOME-0340913_CDS_0013 4 AcrVIB1 0.51 View Alignment MGV-GENOME-0340913_CDS_0013 M -K -------F S E A L E H A R Q -G --A K I A R E G -W -N -G K G M F V F L V -N G D S I K V A I -H E A Y (60)
M E++ + + I G LV + + + I
AcrVIB1 M K D L D L S K L K G E E I A Q W L L N N K K A T A I Q L S S E R T D T D D G F M H I L V H K D E Y V E I -I Y -S Y L
MGV-GENOME-0340913_CDS_0013 G D P T K D G Y -D -V L D F L M M F T A -Q Q T L -V P --W -L -A S --------Q -T D I -L -----A E D (120)
+ + ++ L + D
AcrVIB1 K I D --E D -D -V -M Q N F T I Y S K R W G N I D N S Y F E L -Q T F E G E I F T G E -S D K -I L C G V L S L G D
MGV-GENOME-0340913_CDS_0013 W D V -L (125)
AcrVIB1 L T T L K
MGV-GENOME-0340913_CDS_0013 5 AcrIIA31 0.51 View Alignment MGV-GENOME-0340913_CDS_0013 M -K F S E A L E H A R Q G A K I A ---R -E G -W N ---G -K G M F V F L V N G D S I K V A I H E A Y G D P T K D (60)
M + E + + + G ++ I + P D
AcrIIA31 M V T E E Q L K E V L V G I ---Y E T E Y K D -E Q T F E E Y A D G W D F W I D K D G D I L I -E G -R G M K P -I D
MGV-GENOME-0340913_CDS_0013 G Y D V L D -F L M M F T A Q Q T L V P W L A S Q T D -I -L -A E D W D V L (99)
G + + +
AcrIIA31 G ---V Q K -V G H V -D -N ---------G -V -I -Y --A ---Y
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;