3D Structure for MGV-GENOME-0340779_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.68 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0340779_CDS_0004 1 AcrIIA7 0.75 View Alignment MGV-GENOME-0340779_CDS_0004 M K F S E A L E H A K R G A R I S R E G W N G K G M F V L L I -N G D S I K -V A I ---------------H -E (60)
M F ALE +KRG + R GWNGKGMF+ DS+ I
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G M F I F -M R P E D S L P T N M I V N Q V K S L P E S F K R W V -A -
MGV-GENOME-0340779_CDS_0004 A --Y -G D P K K D G Y D V R D F L M M F T A Q S D L V -P W L A S Q S D I L A E D W C V -L (108)
GD D L M A +V WLASQ+D LA DW +
AcrIIA7 -N N -H G D S E T D R I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V E
MGV-GENOME-0340779_CDS_0004 2 AcrIIA4 0.59 View Alignment MGV-GENOME-0340779_CDS_0004 M K F S E A L E H A K R -G A R I S R E G W -N -G K -G -M F V L L I N G D S I K V A I -H E A Y G D P K K D G Y D V (60)
M ++++ +K + G + + + N + V I + V
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T D S N S I T -Q L I I R V N N D G N E Y V -I S E -S E N E -----S I V
MGV-GENOME-0340779_CDS_0004 R D F L M M F T A Q S D L V P W L A S Q S D I L ---A -E D -W C V -L (97)
F+ F + +
AcrIIA4 E K F I S A F K --N G W N Q E Y E D E E E F Y N D M Q T I T L K S E L N
MGV-GENOME-0340779_CDS_0004 3 AcrIF18 0.54 View Alignment MGV-GENOME-0340779_CDS_0004 M K F S E A L E H A K R G -A R -I S R E G W -N G K G -M F V L L -I N G D S I K V A I H E A Y G D P K K D G Y D V R (60)
M + S++ N +N ++H
AcrIF18 M T T --I -K ---A -A Y -I -S K D Q N W N D G T T T Y W -F D V N -G E T F G V V H G -G E S ---------
MGV-GENOME-0340779_CDS_0004 D F -L M -M -F -T -A Q -S D L V P -W -L A S Q S D I L A E D W C V L (98)
+ + Q I + +
AcrIF18 -W N -A K -V -V -D C -D G A P S D Q -Y T V D Q F N I T E D M I -A E
MGV-GENOME-0340779_CDS_0004 4 AcrIIA24 0.51 View Alignment MGV-GENOME-0340779_CDS_0004 M -K F S E A L E H A K -R --------G -A R I S R E -G W N G K -G M F V L L I -N -G -D S I K V A I H E A Y (60)
M K + +L +K I + + + ++
AcrIIA24 M K K A Q Q L L K E I K T N N V S Y A I M D E D N E I Y C N K E -T N -N -I M D I Y G Y D N E N G H F Y G V Y G D V V
MGV-GENOME-0340779_CDS_0004 G D P K K ----D G Y D V R D F L M M -F -T -A -Q S D L V P W L A S Q S D I L A -E D W C -V ----L (115)
+ + + +D+ D+
AcrIIA24 D G Q I D S R Y F S D D A I L N A I D K L -L -F -L ----G D -P I K R T D L P S D A D F K R T F F F E E
MGV-GENOME-0340779_CDS_0004 5 AcrVIB1 0.50 View Alignment MGV-GENOME-0340779_CDS_0004 M -K -------F S E A L E H A K R --G -A R I S R E G -W -N -G K G M F V L L I -N G D S I K V A I -H E A Y (60)
M E++ + I+ G +L+ + + + I
AcrVIB1 M K D L D L S K L K G E E I A Q W L L N N K K A T A I Q L S S E R T D T D D G F M H I L V H K D E Y V E I -I Y -S Y L
MGV-GENOME-0340779_CDS_0004 G D P K K -D G Y D V R D F L M M F T A -Q S D L -V P --W L -A --------S -Q S D I L -----A E D W C V (120)
+ + L + IL + D
AcrVIB1 K I -D -E -D D V M Q N -F T I Y S K R W G N I D N S Y F E L Q T F E G E I F T G -E S D K I L C G V L S L G D L T T
MGV-GENOME-0340779_CDS_0004 -L (122)
AcrVIB1 L K
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;