3D Structure for MGV-GENOME-0328818_CDS_0066 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.95 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0328818_CDS_0066 1 AcrIE6 0.73 View Alignment MGV-GENOME-0328818_CDS_0066 M A I K -L Y A V K S Y Q Q Y L E K L G T V R K A A A D F E L N N S F S E E A H E L I A K Q Y A E D I E K L S R K V Q E (60)
M + + + ++ + E+ S A + + + E
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L -S P M Y T A V M V T Y D L I G K Q L A S R R A E L I E
MGV-GENOME-0328818_CDS_0066 Y -H E L I E S I V K D -G -G -N -G (80)
E + D
AcrIE6 I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0328818_CDS_0066 2 AcrIIC4 0.60 View Alignment MGV-GENOME-0328818_CDS_0066 M A -I K L Y A V K ----------------S Y Q -Q -Y ---L E K L G T V R K A A A D F E L N N S F S E E A (60)
M + + A DF N + S
AcrIIC4 M K I T S S N -F A T I A T S E N F A K L S V L P K N H R E -P I K G L F K S A V E Q F S S A R D F F K N E N Y S ---
MGV-GENOME-0328818_CDS_0066 H -E -L -I A -K Q Y A E D I E K L -S -R -K -V Q -E -Y -H -E -L -I E S I V K D G G N G (110)
A K E + I+ + K G +
AcrIIC4 -K -E -L -A E K F N K E ----A V -N -E -A -V E -K -L -Q -K -A I D L A E K Q G I Q F
MGV-GENOME-0328818_CDS_0066 3 AcrIE1 0.60 View Alignment MGV-GENOME-0328818_CDS_0066 M -A ---I -K -L -Y -A V -K ------S -------Y Q Q ----Y -L -E ----K L G T V R K A A A D F (60)
M + + L +A
AcrIE1 M E K K L S D A -Q -V -A L -V A A W R K Y P D L R E S L E E A A S I L S L -I -V -F Q A E T L S D Q A N E L A N Y
MGV-GENOME-0328818_CDS_0066 E L -N N S F S E E A H E L I A K Q Y A E D I E K L S R K V Q E Y H E -L I E S I V K D G G N G (108)
+ E + + V+ + ++
AcrIE1 I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D -V D
MGV-GENOME-0328818_CDS_0066 4 AcrIF23 0.57 View Alignment MGV-GENOME-0328818_CDS_0066 M -A ------------------------------------I K -L Y A V ------K ----S Y Q (60)
M + + + + +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F G
MGV-GENOME-0328818_CDS_0066 ------------Q Y L -E -K ------------L G -T -V R K -A A A -D F E -L -N N S -F S E E A H (120)
+ F E +
AcrIF23 G R A L T G T A R Q K E -W A E -K -I R A E K V Q Q M N Q D Q -A -E M A -C D P -S G L -L -T A A -K F W I E N R
MGV-GENOME-0328818_CDS_0066 E L I A K Q Y A E D I E -K -L -S R -K -V Q -E -Y H ----E --------L I E S I V K -D -G G -N -G (178)
A A + + I
AcrIF23 N D S A Q E I A G F V -M -Q -Q -K A -L -L A -Q H -R S A K A A G Q A D K V A K I A A E Y N A -L T A R W G F
MGV-GENOME-0328818_CDS_0066 5 AcrIIA28 0.56 View Alignment MGV-GENOME-0328818_CDS_0066 M A ------I K L Y A V K -S ----Y Q Q Y L E K L G T V R K A A A D F E L N N -S F S E E A H E L I A K Q Y A E (60)
M ++ R A + + K +
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E K Q K E L F N S M H D F R S Q H A K E A R I -P -G W S D K Y N K L E K K M L S
MGV-GENOME-0328818_CDS_0066 D I E K -L S R K V Q E Y H E L -I E -S -I -V K D -G G -N G (93)
D E K I N
AcrIIA28 D F E E V T G I K Y D T L E S E L I W D -N -L S -N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;