3D Structure for MGV-GENOME-0315464_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 80.22 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0315464_CDS_0004 1 AcrIE1 0.72 View Alignment MGV-GENOME-0315464_CDS_0004 M T ------T K N I V I -------A ---K N -K -I -D -N -V Y Q -L V N D L I S Y H G M D I L D L A Y P K (60)
M + +V+ + + + + + +LA
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E -A -A -S -I -L S L I -V F Q A E T L S D Q A N E L A N Y I
MGV-GENOME-0315464_CDS_0004 -H D G E Q D A N A V A E M M M L R Q C A N S L S K A C D I L V D K L T D A I G D E E E Y -E N K (109)
+ A + +C + + + GD +
AcrIE1 R R -Q -G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I -D R D V D
MGV-GENOME-0315464_CDS_0004 2 AcrIE6 0.69 View Alignment MGV-GENOME-0315464_CDS_0004 M T T K N I V I A K N K I D N V -Y Q -L V N D L I S Y H G M D I L D L A Y P K H D G E Q D A N A -V A E M M M L R Q C (60)
M + ++ + L+ + L A M
AcrIE6 M -N N D T E V L E Q Q ----I -K A -F E L L A D E L K D R L P T L ---E I L -S --P M -Y T A V M V T Y D L I
MGV-GENOME-0315464_CDS_0004 A N S L S K A C D I L V D K L ----T -D -A -I -G D --E -E -E Y E N K (100)
+L L++ L D
AcrIE6 G K Q L A S R R A E L I E I L E E Q Y -P -G -H -A A D L S I K -N -L C -P
MGV-GENOME-0315464_CDS_0004 3 AcrIC3 0.60 View Alignment MGV-GENOME-0315464_CDS_0004 M T T K N I V I ------A K N ---K -I -D -N V Y Q ----L V N D L I S -Y H G M D I L D L -A Y P K H ---(60)
M+ + + D +
AcrIC3 M S I Q V T S T N G R T V N L E I E L G S V -V -A -S S G Q V K F M A -D K T -D R G L -E -S -R F -L V P E A G N
MGV-GENOME-0315464_CDS_0004 ---D G E -Q -D -A N A -V A E -M M M L R Q C A N S L S K A C D I L V D K L T D A I G D E E E Y E N K (114)
+ A A S A L
AcrIC3 R R I E V A L -T -G R D -L E A -A N A L F S E L A A S -V E A T N E M Y R E L D A E R A Q I N K A L E G
MGV-GENOME-0315464_CDS_0004 4 AcrIIC4 0.60 View Alignment MGV-GENOME-0315464_CDS_0004 M T --T K N I V I ---------A K N K I D N V Y Q L V N D L I S Y H G M D I L D L A Y P K H D G -E Q D A N A V (60)
M + N + + N + L + +
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N -Y -----
MGV-GENOME-0315464_CDS_0004 A E M M M L R -Q C A N -S L S K A C D I L V D K L T D A I G D E E E Y -E N K (100)
+ A +V+KL+ AI E +
AcrIIC4 -S K E L A E K -F N K E ----A V N E A V E K L Q K A I D L A E K Q G I Q F
MGV-GENOME-0315464_CDS_0004 5 AcrVA1 0.57 View Alignment MGV-GENOME-0315464_CDS_0004 M T -------------T K N I V I A -K N -K I D N V ---Y -Q -L V N D L I S ---------------(60)
M + I + D +
AcrVA1 M Y E A K E R Y A K K K M Q E N T K I D T L T D -E Q H D A L A Q L -C -A F R H K F H -S N K D S L F L S E S A F S G
MGV-GENOME-0315464_CDS_0004 ---------Y ------H -G M ---------------D I -L D L A ----Y P K H ----D ---G - (120)
+ G
AcrVA1 E F S F E M Q S D E N S K L R E V G L P T I E W S F Y D N S H I P D D S -F R E W -F N F A N Y S E L S E T I Q E Q G L
MGV-GENOME-0315464_CDS_0004 E Q D A N A V A E ----M M -M L -R -Q C -A N S L S K A C D I L V D K L T D A I ---G -D E ---E E Y -E N K (180)
E D+ L + + L + +
AcrVA1 E L D L D D D E T Y E L V Y D E -L Y -T -E A M G E Y E E L N Q D I E K Y L R R I D E E H -G T Q Y C P T G F A R L R
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;