3D Structure for MGV-GENOME-0307578_CDS_0001 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 86.93 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0307578_CDS_0001 1 AcrIE6 0.71 View Alignment MGV-GENOME-0307578_CDS_0001 L S K I I R L K L A Q -Y T -N -V -Y Y L C R V K L K H I I T -M S N E T D Y L I S L L M Q N K A K K K M L D -F -V (60)
T I D L L + +
AcrIE6 M -N ------N -D -T E -V -L -E ---Q Q ---I K -A F E L L A D E L K D R L P T L E I L -S P M Y T -A -
MGV-GENOME-0307578_CDS_0001 -F -E N N S D A D E K K M N A I L D E K L R -V E K N I E -N I E -K -A L K E L E -K (105)
+ D+ K E + +E + + +K L
AcrIE6 V -M -V T Y D L I G K Q L A S R R A E L I E I L E E Q Y P G H A -A D L S I K N L -C P
MGV-GENOME-0307578_CDS_0001 2 AcrIIC4 0.63 View Alignment MGV-GENOME-0307578_CDS_0001 L S K I I R L K L A Q Y T N V Y Y L C R V -K -L K H I I T M S N E T D Y -L I S L L M Q N K A K K K M L D -F V F -E (60)
KI + ++ ++ + L + + F
AcrIIC4 M -K I T ---S S N F A T I A T ---S E -N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D -F F K -
MGV-GENOME-0307578_CDS_0001 ---N N S D -A D E -K K M -N A I -L D E K L R V E K N I E N I E K A L K E L E K (103)
+ + E + + ++ K I+ +EK
AcrIIC4 N E N Y S K -E L A E K -F N K E -A V N E A V E K L Q K A I D L A E K Q G I -Q -F
MGV-GENOME-0307578_CDS_0001 3 AcrIE1 0.61 View Alignment MGV-GENOME-0307578_CDS_0001 L S K I I R L K L A Q Y T N V Y Y L C R V K L K H I I T M S N E T D Y L I S L L M Q N K A K K K M L D F V F E N N S D -(60)
K + + + + + ++ + + L +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R Q G L E
MGV-GENOME-0307578_CDS_0001 ---A D E K K M N A I L D E K L R V E K N I E -N I E -K A L K E ----L -E K (102)
+ + + V + ++ +
AcrIE1 E A E G A C R N I D I M R A K W V E V C G E V N Q -H G I R V Y G D A I D R -D V D
MGV-GENOME-0307578_CDS_0001 4 AcrIF23 0.57 View Alignment MGV-GENOME-0307578_CDS_0001 L S K I --I -R L -K L A Q --------------Y -T -N V -Y Y -L C R ---V --------K L ----(60)
+ + Y
AcrIF23 M T N F Q T W L D -S A D I P V Q Q N G Q W I D L E T G I A Y -D P -S Y -N Y A A N T R R A S L S P R G I D -A R A V
MGV-GENOME-0307578_CDS_0001 ---------K -H I I T M ------------S N E -T D Y L -I -S -L L M Q N K A K K K M L D F V F E N N (120)
+ ++ + + + F EN
AcrIF23 A K T F G G R A L -T G T A R Q K E W A E K I R A E K V Q Q -M N Q D -Q -A -E M A C D P S G L L T A A K F W I E N R
MGV-GENOME-0307578_CDS_0001 S D -------A D E K K M N A I L D E K L R V E -----K N I E N I E K A L K E L ---E -K (170)
A+L + + + I L
AcrIF23 -N D S A Q E I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-0307578_CDS_0001 5 AcrIIA28 0.55 View Alignment MGV-GENOME-0307578_CDS_0001 L S K I I R L K L A Q Y T N V Y Y L C R V K L K -H I -I T -M -S -N E -T -D Y -L -I S -L L M Q N K A K K --K (60)
+ L I I E Q
AcrIIA28 M K --T I F T K K ---Q T E ----E L L N D -I S I E K -Q -K -E L -F -N S -M -H D F R S Q H A K E A R I P
MGV-GENOME-0307578_CDS_0001 M L D F V F E N N S D A D E K K M N A I L -D -E -K L R ---V E K N I E -N -I E K A -L K E L E -K (113)
+ +
AcrIIA28 G W S D K Y N K L E K K M L S D F E E V T G -I -K Y D T L E S E -L I W D N -L -S N K F -L Y --N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;