3D Structure for MGV-GENOME-0303367_CDS_0088 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.09 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0303367_CDS_0088 1 AcrIIA27 0.73 View Alignment MGV-GENOME-0303367_CDS_0088 M A H Y T F E I F K Y K W I T D K D G D T Y R D Y I D E M P H F I V E A E N Y I E A T F K A Q K K Y P S D K Y T H M L I (60)
M + + + + + + VEA N EA KA Y +
AcrIIA27 M K T F N I I V S E S A N L K -E H S ---S E L V -D N I I Y K V E A K N R R E A F K K A R E E Y S F S S K W K F N M
MGV-GENOME-0303367_CDS_0088 -----D -T -D V E K --W -----P A D -I S M F (89)
+
AcrIIA27 R D L T A I D -N -T H -R R -A W G R R Y L R V E E -A
MGV-GENOME-0303367_CDS_0088 2 AcrIE2 0.66 View Alignment MGV-GENOME-0303367_CDS_0088 M A H Y T F E I F K Y K W I T D K D G D T Y R D Y I D E M P H F I -V E -A E N -Y I E A T F K A Q K K Y P S D K Y T H (60)
M Y + +D G+ + + A AQ
AcrIE2 M N T Y L I D P R -K -N -N D N S G E R ---F ------T -V -D A -V D I T A A A K S A A Q Q I L G E -E F E G
MGV-GENOME-0303367_CDS_0088 M L I -D T -D V ---E K ----W ----------------P A D I -S M F (103)
+ +T + P +
AcrIE2 L V Y R E T G E -S N G S G M F Q A -Y H H L H G T N R T E T T V G Y P F H V M E -L
MGV-GENOME-0303367_CDS_0088 3 AcrIF5 0.55 View Alignment MGV-GENOME-0303367_CDS_0088 M -A H Y T F E I F K Y K W I T D K D G D T Y R D Y I D -E --M P H F I V -E A E N Y I E A T F K A Q K K Y P -S D K (60)
M + +Y ++ + M + A KA
AcrIF5 M S R P T V V T V T E T P R --N --P G S Y E V N V E R D G K M V V G R A R A G S D P G A A A A K A M Q M A M E W G S
MGV-GENOME-0303367_CDS_0088 Y T H M L I -D T D V E K -W P A D I -S M F (83)
+ ++ + V P +
AcrIF5 P N Y V I L G S N K V L A F I P E Q L R V K M
MGV-GENOME-0303367_CDS_0088 4 AcrIIC1 0.54 View Alignment MGV-GENOME-0303367_CDS_0088 M A H Y T F E I F K Y K W I T D K D G D T Y R D Y I D -E M P H F I V E A E N Y I E A T F K A Q K K Y P ---S D -K Y (60)
MA T I K ++ EN + + P D K
AcrIIC1 M A N K T Y K I G K N A G ---------Y --D -G C G L C L A A I S E N E A I K V K Y L R D I C P D Y D G D D K A
MGV-GENOME-0303367_CDS_0088 T H -M L I ---D T D V ----E K ---W -P -A --D -------I -S -M F (103)
D+ V
AcrIIC1 E D W L R -W G T D S R V K A A A L E M E Q -Y A Y T S V G M A S C W E F -V -E -L
MGV-GENOME-0303367_CDS_0088 5 AcrIC8 0.53 View Alignment MGV-GENOME-0303367_CDS_0088 M A H Y T F E I F K Y -K W I T D K D G -D T Y R D -Y I D -E M P H F I V E A E N Y I E A T F K A Q K K Y P S D K -Y (60)
M + +Y + + +EA+ ++
AcrIC8 M Y -A -I R K I --Q -F F Y G P T D K K S Y V G E ---E A G G R -R E L F K T R A E A Q A R I -E D L E ---E G
MGV-GENOME-0303367_CDS_0088 T H M L I D T D V E K -W -------P -A --D I ---S -M --F (96)
L+ ++
AcrIC8 V Y Y L A H N E S -G R P D Y K I V W V -R G E A Q F E H A -R W M R G
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;