3D Structure for MGV-GENOME-0303367_CDS_0085 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 92.95 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0303367_CDS_0085 1 AcrIIA7 0.77 View Alignment MGV-GENOME-0303367_CDS_0085 M E T L N E K A A E Y A A S V V A T F P E L E S Y K G T I E T I Y G Q G A M E C E L L G E E T G T F G Q A L -E S L K -(60)
M T + SLK
AcrIIA7 M -T -F G ---Q A L ------------------------------------------E -S L K R
MGV-GENOME-0303367_CDS_0085 R -G H L V T R K G W N D K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V S D N Y G D S E T D K I K F (120)
HLV RKGWN KGMFIFMRPEDSLPTNMIVNQVKSLPESFKRWV N GDSETD+IKF
AcrIIA7 -G -H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V A N N H G D S E T D R I K F
MGV-GENOME-0303367_CDS_0085 T A Y L C M K A A D G T V V N G W L A S Q T D M L A N D W M I F E F (154)
TAYLCMKAADGT+VNGWLASQTDMLANDW I
AcrIIA7 T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V -E
MGV-GENOME-0303367_CDS_0085 2 AcrIC1 0.50 View Alignment MGV-GENOME-0303367_CDS_0085 M E T L N E K A A E Y A A S V V A T F P E L E S ---Y K G -T -I -E T I Y G ---------Q ----G A ---M (60)
M +L A+ + ++ +
AcrIC1 M N N L K K T A I -T ----H ---D G V F A Y K N -T E T -V -I G S V G R N D I V M A I D A T H G E F N D K N F I
MGV-GENOME-0303367_CDS_0085 E C E -L -L ---------------------------G ----E -------E T G T F G -Q -A -L E (120)
AcrIC1 I Y A D -T -N G N P I Y L G Y A Y L D D N N D A H I D L A V G A C N E D D D F D E K E I H E M I A E Q M E -L -A K R
MGV-GENOME-0303367_CDS_0085 S L -K R G H L V T R K G W N D K G M -F I F M R P E D S L P T N M I V N Q -V --K S -L -P E -S F K R W V -S D N (180)
G V G + + + P
AcrIC1 Y -Q E L G D T V ------H -G T T R L A F D D D G Y M T V R -L ---D -Q Q --A -Y P -D ----Y R P ---
MGV-GENOME-0303367_CDS_0085 Y G D S E T D K I K F T A Y L C M K A A D G T -V V N G W L -A -------S --Q -T -D M L A N D W M I -F -E F (240)
+++ K A G + WL +A D E
AcrIC1 --E N D D -K H I M W R A -L A L T A T G K E L E V F W L V E D Y E D E E V -N S -W -D F D I A D D ---W -R E L
MGV-GENOME-0303367_CDS_0085 3 AcrIIA12 0.50 View Alignment MGV-GENOME-0303367_CDS_0085 M E T L N E K A A E Y A A S V V A T F P E L E S Y K G T I E T I Y G Q G A M E C E L L G E E T G T F G -Q A -L -E -S (60)
M + + Y + +
AcrIIA12 M -S K T -M ---Y K N --------------D V --------------I -------E -L I -K -N -
MGV-GENOME-0303367_CDS_0085 -L -K R G H L V T R -K G W -N -D K -G M F I F M R P E D S L P T N M I V N Q V -K S L P E S F K R -W V S D N Y G (120)
+ N F PE +
AcrIIA12 A -K T N N E E L L F T S V E R N T R E A A T Q Y F R C P E K H V -----S D A G V ---------Y -Y G ---E
MGV-GENOME-0303367_CDS_0085 D S E T D K -I -K F T A Y L C M K A A D G T V -V N G W -L A S -Q T D M --L A N -D W M I F E F (171)
F + +
AcrIIA12 -D ----F -E -F D G -F E I -------F E D D -L -I Y T R S Y D K E ---E -----L N
MGV-GENOME-0303367_CDS_0085 4 AcrIF13 0.48 View Alignment MGV-GENOME-0303367_CDS_0085 M E T L N E K -A A E Y A A S V V A T F P E L E S Y K G T I E T I Y G Q G A M E C E L L G E E T G T F G Q A L E S L K R (60)
M L + A
AcrIF13 M K L L -N I K I ------N ----E ---------------F A V T A -N --T -E ----------A -
MGV-GENOME-0303367_CDS_0085 G H L V T -R K G W N D K G M F I -F -M R P E D S L P T N M I V N Q V K S L P E S F K R W V S D N Y G D S E T D K --(120)
G + + + + L + G
AcrIF13 G D E L Y L Q L P H T P D S Q H S I -N -H --E P L -------D D D D F V K E V Q E I C D E Y F G -K G D R T L A
MGV-GENOME-0303367_CDS_0085 -I -K -----F T A Y L -C M K A A -------D -G -T V V N G W L A S -Q -T D -M L A N D W M I F -E -F (179)
+ Y G + V A +
AcrIF13 R L S Y A G G Q A ---Y D S -Y T E E D G V Y T T N -T G D Q F V E H S Y A D Y Y N V E V -Y C K -A ---D -L V
MGV-GENOME-0303367_CDS_0085 5 AcrIF18 0.47 View Alignment MGV-GENOME-0303367_CDS_0085 M E T L N E K A A E Y A A S V V A -T F P E L E S Y K G T I E T I Y G Q G A M E C E L L G -E E T G T F G Q A L E S L -(60)
M A Y+
AcrIF18 M T -T I --K A A Y I S ----K -D ------------------------Q N --------W ----N
MGV-GENOME-0303367_CDS_0085 K R G H L V T R K G W N D K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V S D N Y G D S E T D K I K F (120)
G F + S +
AcrIF18 -D G T T T Y W F D V -N G E T F G V V H G ------------G E S ----------------------W
MGV-GENOME-0303367_CDS_0085 T A Y L C M K A A D G T V V N G W L A S Q T D M L A N D -W M I F E F (155)
+ + DG + Q M
AcrIF18 N --A K V V D C D G A P S D Q Y T V D Q F N I -T E -D -M -I A E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;