3D Structure for MGV-GENOME-0302803_CDS_0039 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.54 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0302803_CDS_0039 1 AcrIIA7 0.73 View Alignment MGV-GENOME-0302803_CDS_0039 M N F G E A I I A V Q K G N K I K R N G W N G K N Q Y -V E L --A T C I S Y ----K N -T -------K G E I V N (60)
M+FG A+ + +G + R GWNGK + + + V
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G -M F I F M R P E D S L P T N M I V --N Q V K S L P E S F K R W V A
MGV-GENOME-0302803_CDS_0039 C N H -D A -I ---G -N K A L A F V G T S G V Q -I G W L A S Q S D M L A T D W E I V D (106)
NH D + L G GWLASQ+DMLA+DW IV+
AcrIIA7 N N H G D S E T D R I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V E
MGV-GENOME-0302803_CDS_0039 2 AcrVIA3 0.54 View Alignment MGV-GENOME-0302803_CDS_0039 M N F G E A I I A V Q K -G N K I K R N G W N G K N Q Y -V E L A T C I S Y K N -T K G E I V N C N H D ---A I --G (60)
M E + + GN + ++ +G + +
AcrVIA3 M F -K E F L E K C L R Y G N L Y I L E E T G D R K K -V K R -I S K -----R -H G K V T E A S V L L F D S -G T K
MGV-GENOME-0302803_CDS_0039 N -K A L --A F V G T S G V Q I G W L A S Q S D M L A T -D -W -E I V D (98)
+ + ++G I L
AcrVIA3 R T T I N E I Y -L N S Q G Y F I I R D Q --K R -L --K -L -E -K F K
MGV-GENOME-0302803_CDS_0039 3 AcrIIA4 0.53 View Alignment MGV-GENOME-0302803_CDS_0039 M N F G E A I I A V Q K -G N K I K R N G W N G K N Q Y V E L A T C I S Y K N -T K G E I V N C N H D A I G N K A L A F (60)
MN ++I + +K +G + + I N G + ++
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T D ----S N S I T Q L I I R V N N -D G N E Y V I S E S -E N E S I V E K
MGV-GENOME-0302803_CDS_0039 V G --T -S G V Q I G W L A S Q S D M L A T D ----W E -I V D (94)
+ +
AcrIIA4 F I S A -F K N G W N Q E Y E D E E E F Y N D M Q T I T L K S E L N
MGV-GENOME-0302803_CDS_0039 4 AcrIF18 0.52 View Alignment MGV-GENOME-0302803_CDS_0039 M N F G E A I I A V Q K G -N K -I K R N G W -N G K N Q Y V E L A T C -I S Y K N T K G E I V N C N H D A I G N -K A (60)
M+ + + N T GE H
AcrIF18 M T -T -I ----K A -A Y -I -S K D Q N W N D G ----T --T -T -Y W F D V N G E T F G V V H G -G E -S W N
MGV-GENOME-0302803_CDS_0039 L A F V G T S G V Q I G W L A -S Q S D M L A T D -W -E I V -D (93)
+ V G+ Q +T + +
AcrIF18 A K V V D C D G A P S D Q Y T V D Q F N --I T -E -D -M I A E
MGV-GENOME-0302803_CDS_0039 5 AcrIIA12 0.48 View Alignment MGV-GENOME-0302803_CDS_0039 M N ---F -G -E A I ---I A V Q -K -G N K I K R -N G W -N G K N Q Y V E L A T C -I S -Y K N T K G E I V N C (60)
M+ ++I + + + N + + T
AcrIIA12 M S K T M Y K -N D V I E L I K N A K T -N N E E L L F T S V E R N T R E A ---A -T Q Y F -R --C P E ------
MGV-GENOME-0302803_CDS_0039 N H -D A I G N K A L A F V G T S G V Q I G W L A S --Q S D M L A T D --W E I V D (103)
+ + G G+ + E +
AcrIIA12 --K -H V S D A G V Y -Y G E D F E F D G F E I F E D -D L I Y T R S Y D K E E L N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;