3D Structure for MGV-GENOME-0297425_CDS_0017 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.66 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0297425_CDS_0017 1 AcrIE6 0.77 View Alignment MGV-GENOME-0297425_CDS_0017 M E N K K E I L L I A Q K L T E L R L K Q K M L K W A F E N S K G -L ------P E E K M N A I L D E K L R I D H L I (60)
M + ++ Q + L LK + L +I + +
AcrIE6 M N -N -D T E V L E Q Q I K A F E L L A D E L K D R L P T L E -I L S P M Y T A V M V T Y D L I G K Q L A S R R A E L
MGV-GENOME-0297425_CDS_0017 -K -M -L E -T -K -L -----K E --L ----E -K (90)
L +
AcrIE6 I -E -I L -E -E -Q -Y P G H A A D L S -I K N L -C P
MGV-GENOME-0297425_CDS_0017 2 AcrIIC4 0.65 View Alignment MGV-GENOME-0297425_CDS_0017 M -E N K K E I L ---------L ---I A -Q -------K -L T E L R L K Q K M L K W A F E N S -K G L P E E (60)
M + + + + + ++ F N E
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G -L F K S A V E Q F S S A R D F F K N -E N -Y S K E
MGV-GENOME-0297425_CDS_0017 K M N -A I -L D E K L R I D H L I K M L E T K L K E L -E -K (92)
+ + + + +
AcrIIC4 L A E K -F N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
MGV-GENOME-0297425_CDS_0017 3 AcrIE1 0.63 View Alignment MGV-GENOME-0297425_CDS_0017 M -E ----N K K E I L -------L ----I -A ----Q K ----L -T -E L R L -K -Q -K M -L K W A F E (60)
M ++ + + +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S -L -E E A A S I L S L I -V -F -Q A E T -L -S D -Q A N E L A N
MGV-GENOME-0297425_CDS_0017 N S K G L P E E K M N A I L D E K L R I D H L I K M ----L E -T -K L ----K E L -----E -K (112)
+ E + + + +
AcrIE1 Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V -N -Q H G I R V Y G D -A I D R D -V D
MGV-GENOME-0297425_CDS_0017 4 AcrIF23 0.60 View Alignment MGV-GENOME-0297425_CDS_0017 M -E N K K ----E I ---L -L I ---------A -----------------------------Q -(60)
M +
AcrIF23 M T N F Q T W L D S A -D I P V Q Q -N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A -K
MGV-GENOME-0297425_CDS_0017 ------------------K ----L T E ----L R L K Q K M L K W -A F -E N -S -K G -------L P (120)
K + + + K
AcrIF23 T F G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L -L -T A -A K -F W I E N R N D S
MGV-GENOME-0297425_CDS_0017 E E K M N A I ---L -D E K L -R -I -D ---------H L I K M L E T K L K E L -E ---K (170)
L + + L
AcrIF23 A Q E I A G F V M Q Q K A -L L A -Q -H -R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-0297425_CDS_0017 5 AcrIIA28 0.55 View Alignment MGV-GENOME-0297425_CDS_0017 M -E --N K K E I ----L -L -I A Q K L T E L R L K Q K -M L K -W A F -E N S ------K G ----L ----(60)
M +KK + K EL + +
AcrIIA28 M K T I F T K K Q T E E L L -N D I S I E K Q K E L F N S M H D -F R S Q -H A K -E A R I P G W S D K Y N K -L E K K
MGV-GENOME-0297425_CDS_0017 P E E K M N -A I -L D E K L R I D H L -I K M L E T K -L K E L --E K (97)
+ ++ ++
AcrIIA28 M L S D F E E V -T G I K Y D T L E S -E -L I W D N -L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;