3D Structure for MGV-GENOME-0279977_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.35 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0279977_CDS_0002 1 AcrIIA7 0.64 View Alignment MGV-GENOME-0279977_CDS_0002 M R K V I A E A N D I S F G A A I L L V K D G Y K I Q R K G W N G K E Q Y V E L --A T C L S Y K N ---A ----A G (60)
M A+ +K G + RKGWNGK + L +
AcrIIA7 M -T -F G --------Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N -Q V K S L P
MGV-GENOME-0279977_CDS_0002 -E -I ----I N V E H -Q D ----I --G N Q A L A F V G T R G V Q -I G W L A S Q S D M L A N D W R A F R (117)
+ H + L G GWLASQ+DMLANDW +
AcrIIA7 E -S -F K R W V A N N H G D S E T D R -I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V E
MGV-GENOME-0279977_CDS_0002 2 AcrVIA3 0.50 View Alignment MGV-GENOME-0279977_CDS_0002 M R K V I A E A N D I S F G A A I L L V K D G Y K -I Q -R K G -W N G K E Q Y -V E L A T C L S Y K N A -A G E I I N (60)
M K +E ++ G +G + G +
AcrVIA3 M F K E F L E ----------K C L R Y G -N L -Y I L E -E -T G D R K K V K R I S K -R -----H -G K V --
MGV-GENOME-0279977_CDS_0002 V E H Q D I -G N Q A L A F V G T -R --G V -Q -I G W L A -S -Q S D M L A -N D -----W R -A F R (114)
++ + S + + F+
AcrVIA3 ------T -E A S V L L F -D S G T K R T T -I N E I Y L N S Q G Y F I I R D Q K R L K L E --K -F K
MGV-GENOME-0279977_CDS_0002 3 AcrIIA4 0.47 View Alignment MGV-GENOME-0279977_CDS_0002 M R K V I A E A N D I S F G -A A I L L V K D -G Y K I Q R K G W -N G -K E Q Y V E L A T C -L S Y K N A A G E I I N (60)
M I +I +K Y + G + + + N G
AcrIIA4 M -N -I N --------D -L I R E I K N K D Y T V K L S G T D S N S ------I T Q L I -I R V N N D G N E Y V
MGV-GENOME-0279977_CDS_0002 V E H Q D I G N Q A L A -F V -G ----T -R G V Q I G W L A S ---Q -S -D M -L -A -N D -W R A F R (115)
+ ++ + V + D
AcrIIA4 I S E S E -N E S ---I -V E K F I S A -F K N G W N Q E Y E D E E E F Y -N D -M -Q -T I T L K S E L N
MGV-GENOME-0279977_CDS_0002 4 AcrIIA12 0.46 View Alignment MGV-GENOME-0279977_CDS_0002 M R K V I A E A N D -I S F G A A I L L V K -D G Y K I Q R -K G W -N G --K -E Q Y V E L A T C L S Y K N A A G E I (60)
M K +I +K + N QY + AG
AcrIIA12 M S K T M ---Y K N -D V I E L I K N A K T N N E E L L F T S V E R N T R E A A T Q Y F R C P E -K -H V S D A G V -
MGV-GENOME-0279977_CDS_0002 I N V E H Q D I G N Q A L A F V G T R G V Q I G W L A S Q S D M L A N D W R A F R (101)
E +
AcrIIA12 Y Y G E D -F E -F D G F E I F -E D D L I Y T R S ----Y -D K E ---E L N
MGV-GENOME-0279977_CDS_0002 5 AcrIIA24 0.45 View Alignment MGV-GENOME-0279977_CDS_0002 M R K V I A E A N ---D I -S F G A A I -L L V K D G Y K I Q R K G -W N G K E Q Y V E L A T C L S Y K N A A G E I I (60)
M+K+ + + + + I + ++ Y N G
AcrIIA24 M K K A Q Q L L K E I K T -N -N -V S Y A I -M D E D N E I Y C N K E -T N N I --M D I Y G ---Y D N E N G H F Y
MGV-GENOME-0279977_CDS_0002 N V E H Q D I G N Q A L -A F V G -T -R G ------V Q I G W L -A S -Q S D M L A N D ---W -R -A -F ---R (120)
V + Q+ + +G + +D + + F
AcrIIA24 G V Y G D V V D G Q I D S R Y F S D D A I L N A I D K L L F L G D -P I -K R T D L P -S -D A D F K -R -T F F F E E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;