3D Structure for MGV-GENOME-0277706_CDS_0001 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.64 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0277706_CDS_0001 1 AcrIE6 0.73 View Alignment MGV-GENOME-0277706_CDS_0001 M E E L K K C Y Q E L Q K M I A -E -I -E -A -K H -E T H I D D F Y -N L D -E D I R D -D Y R G -D -W T E K D V (60)
M L +D+ +
AcrIE6 M N N D T E V ---L E ----Q -Q -I -K -A -F E -L L A D E L K D -R L P -T L E I L ----S -P M Y T A V M
MGV-GENOME-0277706_CDS_0001 Q G W E Y L L N R A S T I R K A Y R I V A E E L H T G E ---F -L P D I D Q (99)
+ + + + R ++EE G + +
AcrIE6 V T Y D L I G K Q L A S R R A E L I E I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0277706_CDS_0001 2 AcrIE1 0.59 View Alignment MGV-GENOME-0277706_CDS_0001 M -E E L K K C Y Q E L Q -------------K -M I A E I E A K H E T H I D D F Y N L D E D I R D D Y R G D -W (60)
M L L +A I ++ ++ R
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E -A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R -Q -
MGV-GENOME-0277706_CDS_0001 T E K D V Q G W E Y L L N R A S T I R K A Y R I V A E E L -H T G -E ----F L P D I D Q (106)
+ E + + R V E+ G +
AcrIE1 ---G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D V D
MGV-GENOME-0277706_CDS_0001 3 AcrIIC4 0.58 View Alignment MGV-GENOME-0277706_CDS_0001 M E E L K K C Y Q E L ------------Q K M I A -E -I E A K H E T H I D D F Y N L D E D I R D D Y -R -G D W (60)
M + K I + ++ +RD
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E -P I K G L F K S A V E ----Q F S S A R D F F K -N E N Y
MGV-GENOME-0277706_CDS_0001 T E K D V -Q G W -E -Y L L N R A S T I R K A Y R I V A E E L H T G E F L P D I -D Q (104)
+ + + A + + E
AcrIIC4 S K E L A E K F N K -E -------A V N E A V E K L Q K A I D L A E K Q G I -Q -F
MGV-GENOME-0277706_CDS_0001 4 AcrVA1 0.58 View Alignment MGV-GENOME-0277706_CDS_0001 M -E ---E L -------K K C -------Y Q -E -L Q K M I A E I E A ----K -H -------------(60)
M E + +
AcrVA1 M Y E A K E R Y A K K K M Q E N T K I D T L T D E Q H D -A -L A Q L C A F R H K F H S -N K D S L F L S E S A F S G E
MGV-GENOME-0277706_CDS_0001 -------------E -----------------T ---------------H I D D F -Y N L -D E D (120)
+ +
AcrVA1 F S F E M Q S D E N S K L -R E V G L P T I E W S F Y D N S H I P D D S F R E W F N F A N Y S E L S E T I Q E -Q G L -
MGV-GENOME-0277706_CDS_0001 -I ---R D -D -Y R -G D -W -T E K D V -Q G -W -E Y -L L N R A S T I R K A Y R I V A E E L H T -G -E F L P (180)
+ + + I K R + EE
AcrVA1 E L D L D D -D -E T -Y E -L -V Y D E L Y T -E A -M G -E Y E E L N Q D I E K Y L R R I D E E H -G T -Q Y C P T
MGV-GENOME-0277706_CDS_0001 ---D I -D Q (188)
AcrVA1 G F A R -L -R
MGV-GENOME-0277706_CDS_0001 5 AcrIF23 0.57 View Alignment MGV-GENOME-0277706_CDS_0001 M E E L K K C Y Q E ---L Q ---K -M I ----A -E -I E A --K H ----E ------------------(60)
M I +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I -A Y D P S Y N -Y A A N -T R R A S L S P R G I D A R A V A K
MGV-GENOME-0277706_CDS_0001 ---T -------------------H I D D -F Y N L D E D I R D D Y R G D ----W T E K D V Q G -W E Y L (120)
+ + +
AcrIF23 T F G -G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A -C D P -S G L L T A A K F W I E N R -N D S
MGV-GENOME-0277706_CDS_0001 L N R A S T I R K A Y R I V A E E L H T G ---------E ----F L P -D I ---D --Q (168)
++ + ++++ ++ +
AcrIF23 A Q E I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A -L T A R -W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;