3D Structure for MGV-GENOME-0267208_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 84.71 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0267208_CDS_0002 1 AcrVA3 0.81 View Alignment MGV-GENOME-0267208_CDS_0002 M L K N K P P H P -S T T A A L V A Y N K A R A -A N W D S V D W T Q D N A T I A V A I G R S Y N T V A K K R V E L G K (60)
M+ W S+DWT NA+IA GR YNTV K R LGK
AcrVA3 M V ------G K -----S K -------I -D W Q S I D W T K T N A Q I A Q E C G R A Y N T V C K M R G K L G K
MGV-GENOME-0267208_CDS_0002 V G L A P R R A R E Y S R T H Y P N -L A ----R K D -G K -G Q -R A A V T A A Q A S P I A G K T E T N C H A K R W (120)
A R + +A A ASP AG+ ETN +AK W
AcrVA3 S H ---Q G A -K S P R K D K G -I -S R P Q P H L N R L -E -Y Q A L A T A K A K A S P K A G R F E T N T K A K T W
MGV-GENOME-0267208_CDS_0002 R I T S P D G E R Y E F S N L H H F I R S H T H L F A P A D T E --W K R Q G G K R G T G -G E Y C N A A S G L Q Y A A (180)
+ SPD Y F+NL HF+R+ HLF D ++ E C A SGL +A
AcrVA3 T L K S P D N K T Y T F T N L M H F V R T N P H L F D -P D D V V W R T K S ----N G -V -E W C R A S S G L A L L A
MGV-GENOME-0267208_CDS_0002 R K -R --G T W K G W Q A E I -I Q G V E (202)
++ + +WKGW +
AcrVA3 K R K K A P L S W K G W R L I S L T K D N K
MGV-GENOME-0267208_CDS_0002 2 AcrIF16 0.52 View Alignment MGV-GENOME-0267208_CDS_0002 M L K N K P P H P S T T A -A L V -A Y N K A R A A N W D S V -D W T Q D N A T I A V A I G R S Y N T V A K K R V E L G (60)
M + A D + D + + + NT+ K +
AcrIF16 M -S ----L S ----D -K K E ----Q K E A Y L D A L R I A P L D R G V L K R I H A V N D N T L D K W L Y V A D
MGV-GENOME-0267208_CDS_0002 K V ---------G L A P -R R A R E Y S R T H Y P N L A R K D G K G Q R A A V T A A Q A -S -P I A G -K ----(120)
+ +R SR + R + A ++ K
AcrIF16 R Y P T F R A C W E L W M F Q R K R R V L I S R K L H V L I N R S T N R T I -E A F E K T Y P P E E R V V -G K S Y R D
MGV-GENOME-0267208_CDS_0002 T E T N C -H -A -K R W R I T S P D G E R Y E F S N L H H F I R S H T H L F -A P A D T E W K R Q G G K R G T G G E Y (180)
T I GE ++ + KR G G
AcrIF16 L V T E K G E R S A N M Y I I ---N G E V V ---G A K D A S I L L G Y S S Y N T L Y A K M K R L G I Q P G -----
MGV-GENOME-0267208_CDS_0002 C N A A S G L Q Y -A A R K R G T W -K -G -W Q A E I -I Q G V E (214)
+S
AcrIF16 -D D I S H ---L --------K -P -E -K R G R K -K E C S
MGV-GENOME-0267208_CDS_0002 3 AcrIIC9 0.47 View Alignment MGV-GENOME-0267208_CDS_0002 M L K N K P P H P S T T A A L V A Y N K A R A A N W D S V D W T -Q D N A T -I A V A I G R S Y N T V A K K R V E L --(60)
M N + + +G S ++ +
AcrIIC9 M T -N L I M Q K I V ----E -------S E I -T N N Y -T -S K K A F A E K Y L G V S N V S L S R Y L S G E Q G
MGV-GENOME-0267208_CDS_0002 -G K V -----------G L A P -R R A R E -Y S R --T H Y P N L A R K D -G K G Q R A A V T A A Q A ----- (120)
+ H P + +
AcrIIC9 L K A E T M N R V E A L F T H Y E -L C I I K K -M L L A S M -H T P E F R E N -P V G E F N R L K L E I A K K W V S Y
MGV-GENOME-0267208_CDS_0002 --S P I A G -K T E T N -C H A K R W R I T S --P ---------D G -E R Y E F S N L H H F I R S H T H L F A P (180)
S + + +I+ +H
AcrIIC9 N R S F L D -A -G T S -E -L P C E L K I Q Y Q G -P S I D P S Y Q K W S S A V M A V K L V H D N ----P M -M N D
MGV-GENOME-0267208_CDS_0002 A D T E W K R -Q G -G K R G T G G E Y C N A A S G L Q Y A A R K R -G T -W K G W -Q A E I I Q G -V E (233)
+ + + R + +
AcrIIC9 V -I T L R -L P -G V S K N R A S A V P A G K K -------N R Q E -W F E K -H I D Q E F N A E -I
MGV-GENOME-0267208_CDS_0002 4 AcrIIA29 0.47 View Alignment MGV-GENOME-0267208_CDS_0002 M L -K N -K P ----P -H P -------S -T T ----A A L V A Y N K -A R A A N W D S V D W T -Q D N A T I A (60)
M + L Y
AcrIIA29 M K P S Q K I K W L L T -A T G I T T Y K I G K D I -E E S T Q F L D R Y K -N D P -E K I ----G -G ----M --
MGV-GENOME-0267208_CDS_0002 V A I G R S Y N T V A K K R V E L ----G -----K V -------------G L A P --------------(120)
++ L +
AcrIIA29 --R L E K A E K L L E Y I S N L R Q E D V I K T N W --N N Q Q I L V Q N S T E K E I --T K Y F N S Y P F A I K L N
MGV-GENOME-0267208_CDS_0002 ---------------R R A R E ----Y S R T H Y P N -L A R K D G K G Q R A A V T A A Q A S P I A G K T E T (180)
+ +R + +
AcrIIA29 W I K P H K E M F I V N F D T -T S N K T F R K -Y P Y D L K -N -L Y F L V D K N R D K M S Q F A E F L -I I C G R K
MGV-GENOME-0267208_CDS_0002 N C H ----------A -K R W R I T S P -----D G E R Y E -F S -N L H H F I R S H T H L F A P A D T E W K -(240)
+ K I S G + +
AcrIIA29 S H F G G S R V L Y E V E G K K Y Q I I F S I K R P S E L G P T I R L -I N V V -E T D ----T Y R D D L V ----P
MGV-GENOME-0267208_CDS_0002 R Q G G K -R G -T G G E Y C N A A -S G L Q Y A A R K R G T W K G W Q A E I -I Q G -V E (286)
+ + L + KR + K + +
AcrIIA29 K ----I -S E -E --E S I L R S E D L -D L K G K R V S I K D S E L L E L M S I I D N
MGV-GENOME-0267208_CDS_0002 5 AcrIF25 0.45 View Alignment MGV-GENOME-0267208_CDS_0002 M L K N K P P H P S T T -A -A L V A Y N K A R A A N W D S V D W T Q D N A T I A V A I ---G -R -S Y N T V A K K R (60)
M N A + G + +
AcrIF25 M D -N -D D ----K K -P --------D -A L I H L R V P A E V K G R W V K E S R L E G M -K L T D W I T G R V
MGV-GENOME-0267208_CDS_0002 V E L G K V -G ----L A P -R R A R E Y S R T H Y P N L A --R K D G K G Q R A A V T A -A Q -A S -P I A G K T E (120)
A AR P +
AcrIF25 E A K A L S I A E V L E E A -A A M A R S L -E D S -P I F -Y R --N K -L C ----A D G -I V -T I -------
MGV-GENOME-0267208_CDS_0002 T N C H --A K R W -R I T S -P -D G E -R Y E -F S N L H H F I R S H T H L F A P A D T E W K R Q G -G K R G T G G (180)
A R+ +T ++ + + G
AcrIF25 --Q -Q Q A A R F S A A T -D -D A T -R L D -A A L W A R E G Y Q L L S S G L P D S Y S G A ---V P N -E G R -T
MGV-GENOME-0267208_CDS_0002 E Y -C -N A A S G L Q Y A A R K R G T W -K G -W ------Q A -E I -I Q G V E (223)
AS + W
AcrIF25 G -W -V -T A S Q M A R L F G G E A L W I E -R C Q Q E L G G A -G K -E -D -G R
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;