3D Structure for MGV-GENOME-0260160_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.98 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0260160_CDS_0004 1 AcrIIA7 0.79 View Alignment MGV-GENOME-0260160_CDS_0004 M D F G K A I E A L K Q G K R V A R K G W N G K G M F L W L K P E A V V K A E W -C ----K -D P L L K S L A E G -N (60)
M FG A+E LK G+ VARKGWNGKGMF++ +PE + K +
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V A N N H
MGV-GENOME-0260160_CDS_0004 G G E ---I P A L G T I C M F T H D S T G R K A V L T G W L A S Q S D I L L E D W E I L D (106)
G G +++GWLASQ+D L+ DW I++
AcrIIA7 G D S E T D R I K F T A Y L C M K A A -D G --T I V N G W L A S Q T D M L A N D W V I V E
MGV-GENOME-0260160_CDS_0004 2 AcrIF18 0.52 View Alignment MGV-GENOME-0260160_CDS_0004 M D F G K A I E A L K Q G K R -V -A -R K G W -N G K G M F L W L K P E A V V K A E W C K D P L L K S L A E G N G G E (60)
M + A+ N W
AcrIF18 M T --T I -K A A Y ----I -S -K -D Q N W N D G T T T Y W F D V ------------------------
MGV-GENOME-0260160_CDS_0004 I P A L G T I C M F T -H D S -T G R K A -V L T -G W L A S Q S D I L L E D ----W E I L -D (109)
G + A V A + ++ + + +
AcrIF18 ---N G E T F G V V H G -G E S W N -A K V -V D C D G A P S D Q Y T V D Q F N I T E D M I A E
MGV-GENOME-0260160_CDS_0004 3 AcrIIA4 0.52 View Alignment MGV-GENOME-0260160_CDS_0004 M D F G K A I E A L K Q -G K R V A R K G W N G K G M F L W L K P E A V V K A E W C K D P L L K S L A E G N G G E I P A (60)
M +I +K+ V G
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T --------------D -----S --------------N -S
MGV-GENOME-0260160_CDS_0004 L G T I C M F T H D S T G R K A V L T G -W ----L -------A -S -----------Q ----S -D I L L E (120)
+ ++ + G V++ + I
AcrIIA4 I T Q L I -I R V N N D G N E Y V I S E S E N E S I V E K F I S A F K N -G W N Q E Y E D E E E F Y N D M -Q T I ---
MGV-GENOME-0260160_CDS_0004 -D -W -E I L D (129)
L
AcrIIA4 T -L K S -E L N
MGV-GENOME-0260160_CDS_0004 4 AcrVIA3 0.50 View Alignment MGV-GENOME-0260160_CDS_0004 M D F G K A I -E A L K Q G K R V A R K G W N G K G M F L W L K P E A V V K A E W C -K D P L L K S L A E G N G G E I P (60)
M + L+ G + +K + G
AcrVIA3 M F -K E F L E K C L R Y G N L Y I L E E --------------T G -----D -R K K V K R I S K R -H G K --
MGV-GENOME-0260160_CDS_0004 A -L -G T I C M F -T H D S T G R K A V L T G W L A S -Q S D I -L -L E D ---W -E I L D (108)
+ DS ++ ++ ++ Q +
AcrVIA3 -V -T -E A S V L L F -D S G T K R T T I N E I Y L N S Q G Y F I I R D Q K R L K L E -K F K
MGV-GENOME-0260160_CDS_0004 5 AcrIIA12 0.49 View Alignment MGV-GENOME-0260160_CDS_0004 M D F ----G -K A ---I E A L K -Q -G K R V A R K G -W -N G -K G M F -L W L K P -E A V -V K A E W C K -D (60)
M + I +K ++ N + P
AcrIIA12 M S K T M Y K -N D V I E L I K N A K T -N N E E L L F T S V E R N T R E A A T Q Y F R C P E K -H V ------S D A
MGV-GENOME-0260160_CDS_0004 P -L L K S L A E G N G G E -I -P A L G T I C M F T H D S T G R K A V L T G -W -L A S Q S -D I L L E D -W -E I L (120)
G + + + L
AcrIIA12 G V -------Y Y G E -D -F -E F D G F E I -F --E -------D -D -L -I Y T R S -Y --D -K -E -E L
MGV-GENOME-0260160_CDS_0004 D (121)
AcrIIA12 N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;